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Os06g0543200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CDPK substrate protein 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.93 (0.0232) R2 : 0.795
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.88 (0.0609) R2dC : 0.428 R2C : 0.435
β3 : -1.15 (0.0424) R2dE : 0.329 R2E : 0.348
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.365 (0.0488) R2dN8 : 0.0312 R2N8 : 0.0172
σ : 0.436
deviance : 87.58
__
_____
C
peak time of C : 6.02
E
wheather : radiation
threshold : 0.01
memory length : 35
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.98 0.438 8.93 -0.0471 1.88 -1.13 -0.421 0.105 -0.363 6.07 0.009953 37 -- --
87.05 0.435 8.93 -0.0439 1.88 -1.12 -0.445 -- -0.364 6.09 0.009999 36 -- --
87.41 0.435 8.93 -0.0507 1.88 -1.13 -- 0.133 -0.366 6.06 0.009985 36 -- --
87.49 0.436 8.93 -0.06 1.88 -1.15 -- -- -0.365 6.02 0.01 35 -- --
244.76 0.733 8.98 0.0207 -- -1.25 -- 0.545 -0.398 -- 0.009985 36 -- --
113.57 0.5 8.89 0.113 2.34 -- -0.728 -- -0.333 8.34 -- -- -- --
115.23 0.503 8.89 0.0913 2.34 -- -- -- -0.333 8.34 -- -- -- --
246.7 0.735 8.97 0.0398 -- -1.25 -- -- -0.391 -- 0.01 35 -- --
87.58 0.436 8.93 -- 1.88 -1.15 -- -- -0.365 6.02 0.01 35 -- --
418.64 0.956 8.95 0.105 -- -- -- -- -0.308 -- -- -- -- --
115.45 0.503 8.9 -- 2.34 -- -- -- -0.343 8.34 -- -- -- --
246.74 0.734 8.97 -- -- -1.25 -- -- -0.395 -- 0.01 35 -- --
418.93 0.955 8.96 -- -- -- -- -- -0.32 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.22 temperature 10.0 1440 > th dose independent rect. 19 10
4 76.22 temperature 30.0 1440 < th dose independent rect. 19 10
8 76.22 humidity 50.0 1440 > th dose independent rect. 19 10
10 76.22 atmosphere 995.0 1440 > th dose independent rect. 19 10
11 76.22 radiation 20.0 1440 < th dose independent rect. 19 10
23 76.22 temperature 10.0 1440 > th dose independent rect. 5 14
26 76.64 radiation 1.0 30 < th dose dependent rect. 18 14
32 76.89 radiation 1.0 30 < th dose dependent rect. 18 12
36 78.30 radiation 1.0 30 < th dose independent rect. 18 12
45 78.70 temperature 30.0 30 < th dose independent rect. 18 11
46 78.84 humidity 60.0 30 > th dose independent rect. 18 11
57 79.65 precipitation 0.1 90 < th dose independent rect. 18 10
58 79.65 precipitation 0.1 90 < th dose dependent rect. 18 10
60 80.05 precipitation 0.1 90 < th dose independent rect. 4 14
61 80.05 precipitation 0.1 90 < th dose dependent rect. 4 14
78 81.21 temperature 15.0 90 > th dose independent rect. 18 10
85 81.35 wind 9.0 90 < th dose independent rect. 18 10
89 81.38 radiation 20.0 90 < th dose independent rect. 18 10
92 81.38 temperature 10.0 90 > th dose independent rect. 4 14
93 81.38 atmosphere 1015.0 90 < th dose independent rect. 4 14
94 81.40 atmosphere 995.0 90 > th dose independent rect. 18 10
98 81.42 radiation 40.0 90 < th dose dependent rect. 18 10
109 81.73 wind 1.0 90 > th dose independent rect. 18 10
139 82.66 wind 9.0 90 < th dose independent rect. 4 14
146 82.92 precipitation 0.1 270 < th dose independent rect. 7 13
147 82.92 precipitation 0.1 270 < th dose dependent rect. 7 13
188 84.40 atmosphere 995.0 30 > th dose independent rect. 5 13
191 84.49 temperature 10.0 90 > th dose dependent rect. 18 10
197 84.75 precipitation 0.1 270 < th dose independent rect. 16 11
198 84.75 precipitation 0.1 270 < th dose dependent rect. 16 11
202 85.12 radiation 20.0 270 < th dose independent rect. 20 11
205 85.32 humidity 70.0 270 > th dose independent rect. 20 11
207 85.36 wind 9.0 270 < th dose independent rect. 7 13
208 85.45 wind 9.0 270 < th dose independent rect. 20 11
211 85.49 temperature 10.0 270 > th dose independent rect. 20 11
212 85.49 temperature 30.0 270 < th dose independent rect. 20 11
213 85.49 humidity 50.0 270 > th dose independent rect. 20 11
215 85.49 atmosphere 995.0 270 > th dose independent rect. 20 11
217 85.49 temperature 10.0 270 > th dose independent rect. 7 13
218 85.49 atmosphere 1015.0 270 < th dose independent rect. 7 13
220 85.74 atmosphere 1015.0 90 < th dose independent rect. 18 10
232 86.20 wind 9.0 720 < th dose independent rect. 19 13
235 86.24 precipitation 0.1 270 < th dose independent rect. 20 11
236 86.24 precipitation 0.1 270 < th dose dependent rect. 20 11
246 86.50 temperature 10.0 720 > th dose independent rect. 8 11
247 86.50 atmosphere 1015.0 720 < th dose independent rect. 8 11
248 86.50 temperature 10.0 720 > th dose independent rect. 19 13
249 86.50 temperature 30.0 720 < th dose independent rect. 19 13
250 86.50 humidity 50.0 720 > th dose independent rect. 19 13
251 86.50 atmosphere 995.0 720 > th dose independent rect. 19 13
264 86.54 radiation 30.0 270 < th dose independent rect. 16 11
267 86.57 radiation 40.0 1440 < th dose dependent rect. 19 10
276 86.66 radiation 40.0 720 < th dose independent rect. 19 13
279 86.70 temperature 10.0 270 > th dose independent rect. 16 11
283 86.71 radiation 40.0 270 < th dose dependent rect. 20 11
284 86.73 wind 9.0 270 < th dose independent rect. 16 11
294 87.17 wind 7.0 720 < th dose independent rect. 4 3
306 87.41 humidity 70.0 720 > th dose independent rect. 4 3
309 87.46 radiation 1.0 90 > th dose independent rect. 13 18
316 87.62 radiation 30.0 720 < th dose independent rect. 4 3
318 87.65 temperature 10.0 720 > th dose independent rect. 4 3
319 87.65 temperature 30.0 720 < th dose independent rect. 4 3
320 87.65 humidity 50.0 720 > th dose independent rect. 4 3
322 87.65 atmosphere 995.0 720 > th dose independent rect. 4 3
323 87.65 atmosphere 1015.0 720 < th dose independent rect. 4 3
325 87.65 temperature 10.0 720 > th dose independent rect. 7 21
327 87.66 precipitation 0.1 720 < th dose independent rect. 8 11
328 87.66 precipitation 0.1 720 < th dose dependent rect. 8 11
334 87.77 wind 1.0 720 > th dose independent rect. 16 3
336 87.83 precipitation 0.1 720 < th dose independent rect. 7 6
337 87.83 precipitation 0.1 720 < th dose dependent rect. 7 6
352 88.06 radiation 30.0 720 < th dose independent rect. 16 3
356 88.15 temperature 10.0 720 > th dose independent rect. 16 3
357 88.15 atmosphere 1015.0 720 < th dose independent rect. 16 3
359 88.15 temperature 10.0 720 > th dose independent rect. 19 21
366 88.22 precipitation 0.1 720 < th dose independent rect. 4 3
368 88.22 precipitation 0.1 720 < th dose dependent rect. 4 3
396 88.40 wind 1.0 270 > th dose independent rect. 7 13
397 88.41 temperature 10.0 720 > th dose independent rect. 7 6
398 88.41 atmosphere 995.0 720 > th dose independent rect. 7 6
399 88.41 atmosphere 1015.0 720 < th dose independent rect. 7 6
400 88.41 temperature 10.0 720 > th dose independent rect. 13 18
412 88.62 wind 9.0 720 < th dose independent rect. 16 3
420 88.78 wind 9.0 720 < th dose independent rect. 7 6
421 88.78 wind 9.0 720 < th dose independent rect. 19 6
431 88.94 radiation 1.0 30 < th dose dependent sin 13 NA
459 89.01 temperature 10.0 720 > th dose independent rect. 19 6
460 89.01 temperature 30.0 720 < th dose independent rect. 19 6
461 89.01 humidity 50.0 720 > th dose independent rect. 19 6
462 89.01 atmosphere 995.0 720 > th dose independent rect. 19 6
463 89.01 radiation 1.0 720 < th dose independent rect. 19 6
468 89.01 temperature 10.0 720 > th dose independent rect. 1 18
470 89.01 radiation 1.0 720 < th dose dependent rect. 19 6
475 89.14 atmosphere 995.0 270 > th dose independent rect. 16 11
502 89.43 wind 1.0 90 > th dose independent rect. 4 14
515 89.66 temperature 10.0 720 > th dose independent rect. 13 9
516 89.66 temperature 10.0 720 > th dose independent rect. 22 15
517 89.66 atmosphere 995.0 720 > th dose independent rect. 22 15
519 89.73 radiation 1.0 90 > th dose independent rect. 11 22
520 89.77 wind 1.0 270 > th dose independent rect. 16 11
526 89.83 wind 9.0 720 < th dose independent rect. 8 11
532 90.00 radiation 1.0 720 > th dose independent rect. 7 6
538 90.09 radiation 1.0 90 < th dose dependent rect. 5 23
540 90.13 temperature 10.0 720 > th dose independent rect. 1 9
541 90.13 atmosphere 995.0 720 > th dose independent rect. 1 9
542 90.13 temperature 10.0 720 > th dose independent rect. 10 15
548 90.21 radiation 1.0 30 < th dose dependent rect. 7 23
553 90.25 wind 9.0 720 < th dose independent rect. 1 9
562 90.27 radiation 1.0 30 < th dose dependent no NA NA
575 90.35 precipitation 0.1 720 < th dose independent rect. 16 3
576 90.35 humidity 50.0 720 > th dose independent rect. 1 9
577 90.35 precipitation 0.1 720 < th dose dependent rect. 16 3
583 90.40 humidity 50.0 30 > th dose independent rect. 5 13
591 90.45 radiation 1.0 90 < th dose independent rect. 5 23
609 90.60 radiation 40.0 90 < th dose independent rect. 4 14
612 90.62 radiation 1.0 30 < th dose independent sin 13 NA
614 90.64 atmosphere 995.0 270 > th dose independent rect. 7 13
615 90.65 radiation 1.0 30 > th dose independent sin 13 NA
618 90.70 radiation 1.0 30 > th dose independent rect. 17 14
626 90.79 wind 9.0 720 < th dose independent rect. 19 21
628 90.81 precipitation 0.1 720 < th dose independent rect. 7 21
629 90.81 precipitation 0.1 720 < th dose dependent rect. 7 21
655 90.92 radiation 40.0 30 < th dose dependent rect. 5 13
659 90.98 precipitation 0.1 720 < th dose independent rect. 7 4
660 90.98 precipitation 0.1 720 < th dose dependent rect. 7 4
661 91.00 temperature 20.0 90 > th dose independent rect. 5 2
662 91.00 humidity 50.0 90 > th dose dependent rect. 21 12
681 91.17 wind 1.0 720 > th dose independent rect. 8 11
695 91.25 wind 9.0 720 < th dose independent rect. 7 4
714 91.35 temperature 10.0 720 > th dose independent rect. 7 4
715 91.35 atmosphere 995.0 720 > th dose independent rect. 7 4
716 91.35 atmosphere 1015.0 720 < th dose independent rect. 7 4
717 91.35 temperature 10.0 720 > th dose independent rect. 11 20
719 91.38 temperature 10.0 720 > th dose dependent rect. 9 1
733 91.45 wind 9.0 720 < th dose independent rect. 19 4
748 91.55 wind 9.0 720 < th dose independent rect. 7 21
756 91.62 temperature 20.0 90 > th dose dependent rect. 5 2
760 91.63 radiation 40.0 720 < th dose dependent rect. 4 3
761 91.67 temperature 10.0 720 > th dose independent rect. 19 4
762 91.67 temperature 30.0 720 < th dose independent rect. 19 4
763 91.67 humidity 50.0 720 > th dose independent rect. 19 4
764 91.67 atmosphere 995.0 720 > th dose independent rect. 19 4
765 91.67 radiation 1.0 720 < th dose independent rect. 19 4
770 91.67 temperature 10.0 720 > th dose independent rect. 23 20
771 91.67 radiation 40.0 720 < th dose dependent rect. 17 2
772 91.67 temperature 10.0 720 > th dose dependent rect. 8 3
773 91.67 radiation 1.0 720 < th dose dependent rect. 19 4
779 91.71 humidity 50.0 720 > th dose independent rect. 7 4
782 91.73 radiation 1.0 720 > th dose independent rect. 7 4
818 91.99 radiation 20.0 30 < th dose independent rect. 5 13
825 92.07 humidity 80.0 90 < th dose independent rect. 18 19
836 92.15 temperature 10.0 720 > th dose independent rect. 23 5
837 92.15 temperature 30.0 720 < th dose independent rect. 23 5
838 92.15 humidity 50.0 720 > th dose independent rect. 23 5
841 92.15 atmosphere 995.0 720 > th dose independent rect. 23 5
842 92.15 radiation 1.0 720 < th dose independent rect. 23 5
847 92.15 precipitation 0.1 720 < th dose independent rect. 23 5
849 92.15 temperature 10.0 720 > th dose independent rect. 4 19
850 92.15 radiation 1.0 720 < th dose dependent rect. 23 5
855 92.15 precipitation 0.1 720 < th dose dependent rect. 23 5
856 92.18 wind 9.0 720 < th dose independent rect. 23 5
859 92.19 precipitation 0.1 720 < th dose independent rect. 1 18
862 92.19 precipitation 0.1 720 < th dose dependent rect. 1 18
865 92.23 humidity 50.0 720 > th dose dependent rect. 4 3
866 92.24 wind 9.0 720 < th dose independent rect. 22 15
870 92.29 radiation 1.0 90 < th dose independent rect. 7 21
874 92.32 temperature 10.0 720 > th dose independent rect. 11 5
875 92.32 atmosphere 1015.0 720 < th dose independent rect. 11 5
878 92.32 temperature 10.0 720 > th dose independent rect. 16 19
887 92.38 radiation 1.0 90 < th dose independent rect. 9 19
953 92.70 precipitation 0.1 720 < th dose independent rect. 19 13
954 92.70 precipitation 0.1 720 < th dose dependent rect. 19 13
957 92.72 radiation 1.0 30 > th dose independent rect. 17 16