Os06g0542100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0542100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.64 | 0.624 | 4.14 | -0.218 | 1.11 | -1.56 | -0.508 | 1.12 | -0.0186 | 10.8 | 10.72 | 77 | -- | -- |
| 177.5 | 0.621 | 4.16 | -0.371 | 1.12 | -1.54 | -0.315 | -- | -0.0585 | 10.8 | 14.2 | 73 | -- | -- |
| 177.54 | 0.621 | 4.15 | -0.308 | 1.12 | -1.57 | -- | 0.667 | -0.0405 | 10.8 | 9.958 | 75 | -- | -- |
| 177.89 | 0.621 | 4.16 | -0.391 | 1.12 | -1.57 | -- | -- | -0.0594 | 10.8 | 14.2 | 73 | -- | -- |
| 206.38 | 0.669 | 4.18 | -0.249 | -- | -1.79 | -- | 0.0897 | -0.00811 | -- | -16.27 | 733 | -- | -- |
| 201 | 0.665 | 4.21 | -0.693 | 0.991 | -- | -0.528 | -- | -0.28 | 9.26 | -- | -- | -- | -- |
| 201.99 | 0.666 | 4.21 | -0.711 | 0.992 | -- | -- | -- | -0.28 | 9.29 | -- | -- | -- | -- |
| 206.34 | 0.669 | 4.17 | -0.253 | -- | -1.84 | -- | -- | 0.003 | -- | -8.672 | 722 | -- | -- |
| 181.52 | 0.628 | 4.15 | -- | 1.16 | -1.76 | -- | -- | 0.00646 | 11 | 14.2 | 73 | -- | -- |
| 259.31 | 0.752 | 4.24 | -0.716 | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
| 215.32 | 0.686 | 4.19 | -- | 0.992 | -- | -- | -- | -0.201 | 9.35 | -- | -- | -- | -- |
| 207.85 | 0.671 | 4.16 | -- | -- | -1.93 | -- | -- | 0.0431 | -- | -1.172 | 729 | -- | -- |
| 272.82 | 0.771 | 4.22 | -- | -- | -- | -- | -- | -0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 20 | 171.88 | temperature | 25 | 30 | < th | dose independent | rect. | 5 | 21 |
| 23 | 172.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 28 | 172.78 | temperature | 10 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 40 | 173.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 58 | 174.57 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 19 |
| 70 | 174.98 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 90 | 175.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 123 | 176.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 16 |
| 127 | 176.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 136 | 176.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 137 | 176.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 20 |
| 141 | 176.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 147 | 176.78 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 152 | 176.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 153 | 176.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 179 | 176.99 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 184 | 177.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 18 |
| 197 | 177.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 241 | 177.40 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 264 | 177.54 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 289 | 177.65 | radiation | 30 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 298 | 177.71 | radiation | 30 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 336 | 177.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 342 | 177.93 | humidity | 60 | 90 | > th | dose independent | rect. | 5 | 20 |
| 345 | 177.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 363 | 178.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 366 | 178.02 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 370 | 178.06 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 376 | 178.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 403 | 178.21 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 405 | 178.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 481 | 178.62 | radiation | 30 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 572 | 178.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 16 |
| 578 | 179.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 598 | 179.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 630 | 179.14 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 5 | 19 |
| 674 | 179.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 712 | 179.37 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 723 | 179.41 | radiation | 30 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 747 | 179.48 | radiation | 30 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 758 | 179.51 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 760 | 179.51 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 15 |
| 764 | 179.52 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 7 |
| 812 | 179.62 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 3 |
| 861 | 179.68 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 21 |
| 891 | 179.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 13 |
| 947 | 179.89 | temperature | 25 | 720 | < th | dose independent | rect. | 21 | 1 |