Os06g0542000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0542000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.12 | 0.428 | 7 | 0.432 | 0.825 | -0.385 | 0.031 | 2.76 | 0.465 | 21 | 0.2652 | 7539 | -- | -- |
| 88.81 | 0.439 | 7.04 | 0.367 | 0.829 | 0.378 | 0.0133 | -- | 0.527 | 21.2 | 0.5 | 2892 | -- | -- |
| 83.08 | 0.425 | 7 | 0.468 | 0.823 | -0.428 | -- | 2.87 | 0.466 | 21.1 | 0.3345 | 7538 | -- | -- |
| 88.73 | 0.439 | 7.03 | 0.371 | 0.815 | 0.386 | -- | -- | 0.541 | 21.1 | 0.5 | 2933 | -- | -- |
| 122.09 | 0.515 | 6.98 | 0.465 | -- | -0.426 | -- | 2.9 | 0.463 | -- | 0.3274 | 7660 | -- | -- |
| 91.38 | 0.448 | 7.03 | 0.492 | 0.82 | -- | 0.00526 | -- | 0.521 | 21.1 | -- | -- | -- | -- |
| 91.38 | 0.448 | 7.03 | 0.492 | 0.82 | -- | -- | -- | 0.521 | 21.1 | -- | -- | -- | -- |
| 127.06 | 0.525 | 7.02 | 0.327 | -- | 0.457 | -- | -- | 0.52 | -- | 0.5 | 2119 | -- | -- |
| 92.09 | 0.447 | 7.03 | -- | 0.813 | 0.515 | -- | -- | 0.516 | 21.1 | 0.5 | 3004 | -- | -- |
| 130.23 | 0.533 | 7.01 | 0.494 | -- | -- | -- | -- | 0.516 | -- | -- | -- | -- | -- |
| 97.75 | 0.462 | 7.05 | -- | 0.82 | -- | -- | -- | 0.466 | 21.2 | -- | -- | -- | -- |
| 130.1 | 0.531 | 7.01 | -- | -- | 0.548 | -- | -- | 0.512 | -- | 0.5002 | 3030 | -- | -- |
| 136.66 | 0.546 | 7.02 | -- | -- | -- | -- | -- | 0.462 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.53 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 2 | 81.53 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 3 | 81.54 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 5 | 81.58 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 6 | 81.58 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 8 | 81.59 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 53 | 81.76 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 54 | 81.76 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 61 | 81.79 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 78 | 81.81 | atmosphere | 1000.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 79 | 81.81 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 101 | 81.86 | atmosphere | 1000.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 109 | 81.87 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 177 | 82.00 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 4 | 17 |
| 293 | 82.17 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 358 | 82.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 421 | 82.27 | atmosphere | 1000.0 | 14400 | > th | dose independent | no | NA | NA |
| 453 | 82.29 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 481 | 82.32 | atmosphere | 1000.0 | 14400 | < th | dose independent | no | NA | NA |
| 484 | 82.32 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 495 | 82.33 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 510 | 82.35 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 525 | 82.38 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 644 | 82.58 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 645 | 82.58 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 722 | 82.75 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 3 | 18 |
| 752 | 82.78 | wind | 7.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 770 | 82.79 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 16 | 22 |
| 772 | 82.80 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 785 | 82.80 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 17 | 20 |
| 813 | 82.82 | atmosphere | 1005.0 | 14400 | < th | dose dependent | no | NA | NA |
| 815 | 82.82 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 1 | 14 |
| 831 | 82.82 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 834 | 82.82 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 843 | 82.83 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 868 | 82.84 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 919 | 82.85 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 959 | 82.87 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 965 | 82.87 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 6 |
| 992 | 82.88 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 3 | 2 |