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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0541600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to KI domain interacting kinase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.0408) R2 : 0.336
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.955 (0.0992) R2dC : 0.143 R2C : 0.143
β3 : 1.5 (0.17) R2dE : 0.118 R2E : 0.0941
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.636 (0.0866) R2dN8 : 0.107 R2N8 : 0.0513
σ : 0.762
deviance : 267.86
__
_____
C
peak time of C : 22
E
wheather : precipitation
threshold : 1.5
memory length : 2197
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
259.18 0.756 3.69 0.675 1.03 7.56 0.119 -18 0.704 22.1 0.1122 283 -- --
283.72 0.791 3.63 1.03 1.06 1.21 0.582 -- 0.641 22 0.5003 154 -- --
259.18 0.75 3.69 0.664 1.03 7.56 -- -18 0.704 22.1 0.1034 285 -- --
263.51 0.756 3.62 0.79 0.992 1.79 -- -- 0.647 22 0.8184 880 -- --
321.62 0.835 3.65 0.7 -- 6.7 -- -13.2 0.699 -- 0.5 285 -- --
285.17 0.792 3.63 1.04 1.05 -- 0.581 -- 0.638 22 -- -- -- --
286.49 0.793 3.63 1.02 1.05 -- -- -- 0.637 22.1 -- -- -- --
321.54 0.835 3.62 0.74 -- 1.82 -- -- 0.646 -- 1.269 880 -- --
267.86 0.762 3.63 -- 0.955 1.5 -- -- 0.636 22 1.5 2197 -- --
353.23 0.878 3.6 1.03 -- -- -- -- 0.638 -- -- -- -- --
313.67 0.828 3.65 -- 1.06 -- -- -- 0.524 22.1 -- -- -- --
324.51 0.839 3.59 -- -- 1.67 -- -- 0.665 -- 1.051 2188 -- --
381.18 0.911 3.62 -- -- -- -- -- 0.524 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 255.16 precipitation 0.1 14400 > th dose dependent rect. 4 14
7 255.72 humidity 90.0 1440 < th dose dependent rect. 10 4
14 256.10 precipitation 0.1 14400 > th dose dependent rect. 14 5
15 256.18 precipitation 0.1 14400 > th dose dependent rect. 16 3
18 256.22 humidity 50.0 1440 > th dose dependent rect. 10 4
21 256.27 precipitation 0.1 14400 > th dose dependent rect. 12 7
27 256.44 precipitation 0.1 270 > th dose independent rect. 23 20
28 256.47 humidity 50.0 1440 > th dose dependent rect. 11 1
34 256.86 precipitation 0.1 14400 < th dose independent rect. 16 2
36 256.86 precipitation 0.1 14400 < th dose dependent rect. 16 2
38 256.87 precipitation 0.1 14400 > th dose independent rect. 16 2
43 257.10 precipitation 0.1 14400 > th dose independent rect. 14 4
44 257.12 precipitation 0.1 14400 < th dose independent rect. 14 4
45 257.12 precipitation 0.1 14400 < th dose dependent rect. 14 4
51 257.23 precipitation 0.1 270 > th dose independent rect. 10 19
54 257.29 precipitation 0.1 14400 < th dose independent rect. 8 10
55 257.29 precipitation 0.1 14400 < th dose dependent rect. 8 10
56 257.31 precipitation 0.1 14400 > th dose independent rect. 8 10
60 257.35 precipitation 0.1 14400 < th dose independent rect. 6 12
62 257.35 precipitation 0.1 14400 < th dose dependent rect. 6 12
63 257.37 precipitation 0.1 14400 > th dose independent rect. 6 12
74 257.47 humidity 90.0 1440 < th dose dependent rect. 11 1
75 257.48 precipitation 0.1 270 > th dose independent rect. 13 15
84 257.56 humidity 90.0 1440 > th dose independent rect. 13 1
89 257.61 humidity 90.0 1440 > th dose dependent rect. 13 1
92 257.62 humidity 90.0 1440 < th dose dependent rect. 13 1
109 257.87 precipitation 0.1 270 > th dose independent sin 2 NA
112 257.88 precipitation 0.1 270 > th dose independent rect. 10 21
139 258.10 precipitation 0.1 43200 > th dose dependent rect. 19 2
143 258.16 precipitation 0.1 270 > th dose independent rect. 13 19
167 258.25 precipitation 0.1 270 < th dose independent sin 2 NA
168 258.25 precipitation 0.1 270 < th dose dependent sin 2 NA
170 258.26 wind 3.0 4320 < th dose dependent rect. 9 2
185 258.36 precipitation 0.1 14400 > th dose dependent sin 23 NA
192 258.39 humidity 90.0 1440 > th dose independent rect. 10 4
204 258.57 humidity 90.0 1440 > th dose dependent rect. 10 4
256 259.07 precipitation 0.1 270 > th dose independent rect. 19 23
260 259.12 precipitation 0.1 270 > th dose independent rect. 8 23
263 259.13 humidity 50.0 1440 > th dose dependent rect. 13 1
282 259.39 humidity 80.0 1440 < th dose dependent rect. 2 14
314 259.66 precipitation 0.1 270 > th dose independent rect. 6 23
329 259.77 precipitation 0.1 270 > th dose independent rect. 2 23
350 259.94 precipitation 0.1 270 > th dose independent no NA NA
351 259.94 precipitation 0.1 270 < th dose independent no NA NA
355 259.94 precipitation 0.1 270 < th dose dependent no NA NA
376 260.01 humidity 60.0 1440 < th dose independent rect. 11 1
427 260.37 wind 1.0 43200 < th dose dependent rect. 12 1
438 260.44 precipitation 0.1 270 > th dose independent rect. 16 23
449 260.53 humidity 60.0 1440 < th dose independent rect. 10 3
459 260.59 precipitation 0.1 270 > th dose dependent sin 2 NA
524 260.86 humidity 50.0 1440 > th dose independent rect. 13 1
536 260.96 humidity 80.0 1440 < th dose dependent sin 3 NA
538 260.97 precipitation 0.1 43200 < th dose independent rect. 19 2
539 260.97 precipitation 0.1 43200 < th dose dependent rect. 19 2
548 261.05 humidity 80.0 1440 < th dose independent rect. 9 5
580 261.20 precipitation 0.1 270 > th dose independent sin 13 NA
586 261.22 humidity 60.0 1440 > th dose independent rect. 10 3
605 261.35 humidity 60.0 1440 > th dose independent rect. 11 1
612 261.37 humidity 80.0 1440 > th dose independent rect. 8 7
617 261.39 precipitation 0.1 43200 > th dose independent rect. 19 2
722 261.69 wind 1.0 14400 > th dose independent rect. 1 2
743 261.78 humidity 50.0 14400 > th dose independent rect. 14 5
749 261.79 humidity 50.0 14400 > th dose independent rect. 14 7
754 261.80 humidity 50.0 14400 > th dose independent rect. 14 19
756 261.81 humidity 50.0 14400 > th dose independent rect. 14 17
762 261.82 precipitation 0.1 1440 < th dose independent rect. 4 14
764 261.82 precipitation 0.1 1440 < th dose dependent rect. 4 14
766 261.83 radiation 10.0 43200 > th dose independent rect. 12 1
767 261.83 humidity 50.0 14400 > th dose independent rect. 14 15
774 261.84 precipitation 0.1 270 > th dose dependent rect. 23 18
780 261.86 humidity 50.0 14400 > th dose independent rect. 14 13
783 261.87 precipitation 0.1 14400 > th dose independent sin 23 NA
807 261.90 precipitation 0.1 14400 < th dose independent sin 23 NA
809 261.90 precipitation 0.1 14400 < th dose dependent sin 23 NA
810 261.90 humidity 60.0 720 > th dose dependent rect. 16 2
826 261.95 humidity 60.0 1440 > th dose independent rect. 9 7
886 262.13 humidity 50.0 14400 > th dose independent sin 13 NA
932 262.21 precipitation 0.1 720 > th dose dependent rect. 23 20
978 262.35 humidity 70.0 720 > th dose independent rect. 16 2
983 262.36 humidity 60.0 1440 > th dose independent rect. 2 14
988 262.37 humidity 60.0 1440 > th dose independent rect. 4 12
995 262.40 wind 1.0 14400 < th dose independent rect. 1 2