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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0539600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0278) R2 : 0.000347
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0233 (0.0585) R2dN8 : 0.000448 R2N8 : 0.000347
σ : 0.524
deviance : 125.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.98 0.499 2.94 0.275 0.384 -0.941 0.242 0.294 0.129 14.9 13.12 338 -- --
113.03 0.495 2.94 0.228 0.385 -0.922 0.278 -- 0.117 14.9 14.7 338 -- --
113.15 0.495 2.94 0.3 0.383 -0.935 -- 0.462 0.135 14.9 11.92 335 -- --
113.31 0.496 2.94 0.232 0.384 -0.915 -- -- 0.117 14.9 14.7 341 -- --
117.2 0.504 2.94 0.308 -- -0.733 -- 0.433 0.119 -- 9.373 891 -- --
122.32 0.518 2.97 0.0226 0.228 -- 0.24 -- -0.0184 12 -- -- -- --
122.57 0.518 2.97 0.0322 0.227 -- -- -- -0.0172 12.1 -- -- -- --
117.38 0.505 2.95 0.225 -- -0.726 -- -- 0.096 -- 12.91 906 -- --
114.59 0.499 2.95 -- 0.353 -0.807 -- -- 0.079 14.8 14.71 345 -- --
125.81 0.524 2.97 0.025 -- -- -- -- -0.0205 -- -- -- -- --
122.6 0.518 2.97 -- 0.226 -- -- -- -0.0208 12.1 -- -- -- --
118.54 0.507 2.96 -- -- -0.633 -- -- 0.057 -- 14.8 843 -- --
125.83 0.524 2.97 -- -- -- -- -- -0.0233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.16 temperature 25.0 720 < th dose dependent rect. 9 2
2 110.45 temperature 25.0 270 < th dose dependent rect. 7 14
7 110.66 temperature 30.0 270 < th dose dependent rect. 7 21
20 111.15 temperature 25.0 270 < th dose dependent rect. 8 9
43 111.78 temperature 25.0 270 < th dose dependent sin 22 NA
45 111.80 temperature 30.0 90 < th dose dependent rect. 10 18
72 112.19 temperature 30.0 90 < th dose dependent rect. 10 13
90 112.46 temperature 10.0 270 > th dose dependent rect. 2 23
118 112.68 temperature 10.0 720 > th dose dependent rect. 22 17
129 112.75 temperature 10.0 720 > th dose dependent rect. 4 10
133 112.77 temperature 10.0 270 > th dose dependent rect. 11 23
134 112.79 temperature 10.0 270 > th dose dependent sin 23 NA
141 112.81 temperature 15.0 270 > th dose dependent rect. 3 19
152 112.89 temperature 10.0 720 > th dose dependent rect. 2 13
155 112.92 temperature 25.0 90 < th dose independent rect. 10 7
228 113.20 temperature 10.0 270 > th dose dependent no NA NA
236 113.22 temperature 10.0 720 > th dose dependent sin 5 NA
254 113.26 temperature 30.0 270 < th dose dependent rect. 21 23
258 113.27 temperature 10.0 720 > th dose dependent rect. 3 7
264 113.28 temperature 30.0 720 < th dose dependent rect. 24 18
271 113.29 temperature 30.0 270 < th dose dependent rect. 14 23
272 113.30 humidity 90.0 270 > th dose independent rect. 8 9
294 113.35 temperature 30.0 720 < th dose dependent rect. 24 15
318 113.41 temperature 25.0 90 < th dose independent rect. 10 3
321 113.42 temperature 30.0 720 < th dose dependent sin 4 NA
336 113.45 temperature 30.0 270 < th dose dependent no NA NA
337 113.45 precipitation 0.1 14400 > th dose dependent rect. 20 7
362 113.52 temperature 25.0 90 < th dose independent rect. 10 13
374 113.54 humidity 90.0 270 > th dose dependent rect. 9 8
383 113.55 temperature 15.0 270 > th dose dependent rect. 19 23
384 113.55 temperature 30.0 270 < th dose dependent rect. 17 23
424 113.63 temperature 10.0 270 > th dose dependent rect. 9 23
452 113.69 temperature 25.0 90 < th dose independent rect. 10 17
474 113.75 radiation 1.0 4320 < th dose dependent rect. 7 2
481 113.76 temperature 30.0 90 < th dose dependent rect. 10 22
530 113.84 precipitation 0.1 14400 < th dose independent rect. 20 7
532 113.84 precipitation 0.1 14400 < th dose dependent rect. 20 7
539 113.85 precipitation 0.1 14400 > th dose independent rect. 20 7
549 113.87 radiation 1.0 4320 < th dose independent rect. 7 2
572 113.91 radiation 1.0 4320 > th dose independent rect. 7 2
612 113.97 temperature 15.0 4320 > th dose independent rect. 11 2
624 113.98 precipitation 0.1 14400 > th dose dependent rect. 21 5
689 114.06 wind 1.0 14400 > th dose independent rect. 20 3
697 114.07 temperature 25.0 90 < th dose independent rect. 10 9
698 114.07 temperature 25.0 270 < th dose independent rect. 8 13
805 114.24 temperature 15.0 30 > th dose dependent rect. 23 23
881 114.36 temperature 10.0 1440 > th dose dependent rect. 8 1
914 114.40 temperature 15.0 10 > th dose dependent rect. 12 23
920 114.42 wind 9.0 90 > th dose dependent rect. 10 1
927 114.43 temperature 25.0 270 < th dose independent rect. 7 20
954 114.46 wind 1.0 14400 < th dose independent rect. 20 3
971 114.48 humidity 90.0 270 > th dose independent rect. 9 3
973 114.48 temperature 25.0 270 < th dose independent rect. 8 18
993 114.50 wind 3.0 14400 < th dose dependent rect. 21 1