Os06g0538400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0538400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 347.43 | 0.876 | 9.23 | -5.15 | 3.08 | -1.42 | 1.84 | -0.0206 | -0.553 | 4.56 | 19.88 | 1371 | 4.83 | 1.01 |
| 347.42 | 0.868 | 9.23 | -5.15 | 3.08 | -1.41 | 1.86 | -- | -0.553 | 4.56 | 19.88 | 1370 | 4.83 | 1 |
| 356.27 | 0.879 | 9.23 | -5.13 | 3.09 | -1.4 | -- | -0.0991 | -0.549 | 4.51 | 19.86 | 1375 | 4.82 | 0.983 |
| 356.33 | 0.879 | 9.23 | -5.18 | 3.09 | -1.4 | -- | -- | -0.563 | 4.51 | 19.83 | 1375 | 4.81 | 0.996 |
| 705.85 | 1.24 | 9.24 | -5 | -- | -2.33 | -- | -0.14 | -0.316 | -- | 24.49 | 2410 | 5.18 | 1.28 |
| 485.92 | 1.03 | 9.11 | -4.62 | 3.15 | -- | 1.58 | -- | -0.0493 | 4.5 | -- | -- | -- | -- |
| 492.59 | 1.04 | 9.12 | -4.64 | 3.16 | -- | -- | -- | -0.0577 | 4.47 | -- | -- | -- | -- |
| 669.72 | 1.21 | 9.12 | -5.32 | -- | -2.77 | -- | -- | 0.0647 | -- | 25.6 | 2414 | 5.28 | 1.27 |
| 996.73 | 1.47 | 9.21 | -- | 3.16 | -1.06 | -- | -- | -0.00761 | 4.44 | 19.3 | 1366 | 5.03 | 0.857 |
| 1027.61 | 1.5 | 9.14 | -4.51 | -- | -- | -- | -- | 0.0257 | -- | -- | -- | -- | -- |
| 1059.01 | 1.52 | 9 | -- | 3.08 | -- | -- | -- | 0.459 | 4.5 | -- | -- | -- | -- |
| 1226.2 | 1.63 | 9.1 | -- | -- | -2.38 | -- | -- | 0.581 | -- | 28.6 | 1066 | 5.32 | 2.37 |
| 1564.7 | 1.85 | 9.03 | -- | -- | -- | -- | -- | 0.526 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 335.18 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 4 | 336.97 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 5 | 337.04 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 7 | 337.36 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 13 | 337.94 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 20 | 338.29 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 22 | 338.56 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 23 | 338.68 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 55 | 340.27 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 57 | 340.47 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 70 | 340.92 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 84 | 341.64 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 87 | 341.74 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 90 | 341.78 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 110 | 341.87 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 118 | 342.05 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 153 | 342.42 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 160 | 342.61 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 192 | 342.95 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 208 | 343.14 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 230 | 343.22 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 273 | 343.70 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 290 | 343.92 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 378 | 344.67 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 379 | 344.67 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 2 | 13 |
| 383 | 344.69 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 408 | 344.84 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 443 | 345.18 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 446 | 345.18 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 479 | 345.55 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 481 | 345.59 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 567 | 346.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 573 | 346.41 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 591 | 346.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 592 | 346.49 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 618 | 346.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 643 | 346.65 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 671 | 346.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 672 | 346.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 675 | 346.81 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 691 | 346.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 695 | 346.86 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 697 | 346.89 | humidity | 50.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 835 | 347.55 | atmosphere | 1015.0 | 14400 | < th | dose independent | no | NA | NA |
| 855 | 347.62 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 882 | 347.76 | humidity | 50.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 889 | 347.79 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 20 | 21 |
| 891 | 347.80 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 18 | 20 |
| 896 | 347.81 | humidity | 50.0 | 14400 | < th | dose dependent | no | NA | NA |
| 976 | 347.81 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 3 | 21 |