Os06g0538000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma) (Matricin) (mTRiC-P5).
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Os06g0538000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma) (Matricin) (mTRiC-P5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.28 | 0.222 | 11.8 | 1.12 | 0.284 | 0.497 | 0.539 | -0.772 | 0.357 | 17.5 | 80.02 | 1438 | -- | -- |
| 22.78 | 0.222 | 11.8 | 1.06 | 0.278 | 0.452 | 0.521 | -- | 0.345 | 17.6 | 80.61 | 1431 | -- | -- |
| 22.79 | 0.222 | 11.8 | 1.15 | 0.376 | 0.552 | -- | -1.1 | 0.364 | 17.3 | 79.64 | 1700 | -- | -- |
| 23.46 | 0.226 | 11.8 | 1.06 | 0.282 | 0.466 | -- | -- | 0.347 | 17.6 | 80.63 | 1434 | -- | -- |
| 26.79 | 0.241 | 11.8 | 1.1 | -- | 0.534 | -- | -0.603 | 0.356 | -- | 80.12 | 1324 | -- | -- |
| 25.28 | 0.236 | 11.8 | 1.05 | 0.289 | -- | 0.581 | -- | 0.317 | 17.5 | -- | -- | -- | -- |
| 26.11 | 0.239 | 11.8 | 1.05 | 0.293 | -- | -- | -- | 0.32 | 17.7 | -- | -- | -- | -- |
| 27.13 | 0.243 | 11.8 | 1.06 | -- | 0.502 | -- | -- | 0.345 | -- | 80.24 | 1324 | -- | -- |
| 51.51 | 0.334 | 11.8 | -- | 0.266 | 0.527 | -- | -- | 0.243 | 17.8 | 83.02 | 1460 | -- | -- |
| 30.56 | 0.258 | 11.8 | 1.04 | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
| 55.26 | 0.348 | 11.8 | -- | 0.276 | -- | -- | -- | 0.203 | 17.9 | -- | -- | -- | -- |
| 54.86 | 0.345 | 11.8 | -- | -- | 0.547 | -- | -- | 0.233 | -- | 83.14 | 1377 | -- | -- |
| 59.23 | 0.359 | 11.8 | -- | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 21.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 21.30 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 19 | 21.79 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 9 |
| 24 | 21.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 28 | 21.87 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 31 | 21.89 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 35 | 21.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 40 | 21.93 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 44 | 21.95 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 52 | 21.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 59 | 21.99 | humidity | 90 | 720 | > th | dose dependent | sin | 16 | NA |
| 74 | 22.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 76 | 22.03 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 78 | 22.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 79 | 22.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 84 | 22.05 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 86 | 22.05 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 102 | 22.06 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 107 | 22.07 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 165 | 22.12 | humidity | 80 | 1440 | > th | dose independent | sin | 20 | NA |
| 172 | 22.12 | radiation | 10 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 175 | 22.12 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 191 | 22.13 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 7 |
| 216 | 22.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 219 | 22.16 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 6 |
| 226 | 22.16 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 20 |
| 245 | 22.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 256 | 22.18 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 18 |
| 273 | 22.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 274 | 22.20 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 278 | 22.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 309 | 22.22 | humidity | 80 | 1440 | < th | dose independent | sin | 21 | NA |
| 334 | 22.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 336 | 22.23 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 367 | 22.25 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 391 | 22.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 397 | 22.26 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 426 | 22.28 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 431 | 22.28 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 24 | 7 |
| 452 | 22.29 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 479 | 22.30 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 509 | 22.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 512 | 22.31 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 529 | 22.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 558 | 22.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 585 | 22.34 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 5 |
| 602 | 22.34 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 634 | 22.35 | humidity | 70 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 645 | 22.35 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 650 | 22.36 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 653 | 22.36 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 680 | 22.36 | humidity | 50 | 1440 | > th | dose dependent | sin | 15 | NA |
| 682 | 22.36 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 721 | 22.37 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 744 | 22.39 | wind | 1 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 808 | 22.41 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 3 | 5 |
| 927 | 22.45 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 973 | 22.47 | wind | 1 | 4320 | > th | dose independent | rect. | 3 | 3 |