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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0536800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.77 (0.0407) R2 : 0.214
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.717 (0.0997) R2dC : 0.103 R2C : 0.055
β3 : -1.3 (0.136) R2dE : 0.159 R2E : 0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00974 (0.0855) R2dN8 : -2.14e-05 R2N8 : -0.000259
σ : 0.763
deviance : 268.56
__
_____
C
peak time of C : 22.6
E
wheather : temperature
threshold : 26.5
memory length : 2129
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
255.42 0.751 4.64 1.54 0.812 -1.64 0.0221 3.29 0.379 23.8 24.96 1215 -- --
257.38 0.747 4.76 0.74 0.806 -1.34 -0.242 -- 0.144 22.7 25.4 2084 -- --
255.42 0.744 4.64 1.53 0.822 -1.65 -- 3.3 0.382 23.7 24.92 1203 -- --
256.27 0.746 4.75 0.702 0.78 -1.44 -- -- 0.0916 22.7 26.16 2155 -- --
281.39 0.781 4.64 1.54 -- -1.56 -- 3.36 0.294 -- 26 1582 -- --
318.55 0.837 4.77 0.295 0.57 -- -0.151 -- 0.0191 23.1 -- -- -- --
318.63 0.836 4.77 0.301 0.57 -- -- -- 0.0193 23.2 -- -- -- --
280.98 0.781 4.72 0.812 -- -1.14 -- -- 0.195 -- 26.47 5981 -- --
268.56 0.763 4.77 -- 0.717 -1.3 -- -- 0.00974 22.6 26.5 2129 -- --
338.94 0.86 4.76 0.314 -- -- -- -- 0.0243 -- -- -- -- --
321.01 0.838 4.78 -- 0.573 -- -- -- -0.0142 23.2 -- -- -- --
292.65 0.797 4.78 -- -- -0.987 -- -- -0.0193 -- 27.79 5969 -- --
341.54 0.863 4.77 -- -- -- -- -- -0.0106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 247.95 wind 7e+00 43200 > th dose dependent rect. 17 22
2 248.06 wind 9e+00 43200 < th dose independent rect. 17 22
3 248.11 wind 7e+00 43200 > th dose dependent rect. 19 20
6 248.62 wind 9e+00 43200 > th dose dependent sin 14 NA
13 249.11 wind 9e+00 43200 > th dose independent rect. 17 22
19 249.73 wind 9e+00 43200 > th dose dependent rect. 19 3
21 249.91 wind 9e+00 43200 < th dose independent rect. 19 20
26 250.26 wind 7e+00 43200 > th dose dependent rect. 2 23
30 250.29 wind 7e+00 43200 > th dose dependent rect. 4 23
31 250.30 wind 7e+00 43200 > th dose dependent no NA NA
32 250.31 wind 7e+00 43200 > th dose dependent rect. 4 21
35 250.31 wind 7e+00 43200 > th dose dependent rect. 7 23
43 250.37 wind 7e+00 43200 > th dose dependent rect. 7 21
49 250.39 wind 7e+00 43200 > th dose dependent rect. 24 23
52 250.40 temperature 1e+01 270 > th dose dependent rect. 12 23
53 250.42 wind 7e+00 43200 > th dose dependent rect. 7 18
68 250.49 wind 7e+00 43200 > th dose dependent rect. 10 23
93 250.77 wind 5e+00 43200 > th dose dependent rect. 20 1
103 250.96 wind 9e+00 43200 > th dose independent sin 13 NA
105 251.00 wind 9e+00 43200 > th dose independent rect. 19 6
113 251.13 wind 9e+00 43200 > th dose dependent rect. 14 18
114 251.14 wind 9e+00 43200 < th dose independent sin 13 NA
115 251.17 wind 9e+00 43200 > th dose independent rect. 19 20
121 251.26 wind 9e+00 43200 < th dose independent rect. 19 3
125 251.40 wind 9e+00 43200 < th dose independent rect. 12 23
130 251.49 wind 9e+00 43200 < th dose independent rect. 19 5
138 251.62 wind 9e+00 43200 < th dose independent rect. 22 23
160 251.87 wind 9e+00 43200 > th dose dependent rect. 17 13
163 251.91 wind 9e+00 43200 < th dose independent rect. 7 21
164 251.92 wind 9e+00 43200 > th dose dependent rect. 19 11
165 251.94 wind 9e+00 43200 < th dose independent rect. 5 23
166 251.94 wind 9e+00 43200 < th dose independent rect. 8 23
169 251.95 wind 9e+00 43200 < th dose independent rect. 24 21
171 251.97 wind 9e+00 43200 < th dose independent rect. 5 20
173 251.98 wind 9e+00 43200 < th dose independent rect. 7 18
176 251.98 wind 9e+00 43200 < th dose independent rect. 2 23
177 251.98 wind 9e+00 43200 < th dose independent rect. 24 23
183 252.01 wind 9e+00 43200 < th dose independent rect. 2 19
189 252.03 wind 9e+00 43200 < th dose independent rect. 2 21
196 252.05 wind 9e+00 43200 < th dose independent no NA NA
197 252.06 wind 9e+00 43200 < th dose independent rect. 5 16
215 252.11 wind 9e+00 43200 > th dose dependent rect. 19 7
221 252.13 wind 9e+00 43200 < th dose independent rect. 13 20
234 252.19 wind 9e+00 43200 < th dose independent rect. 10 23
277 252.54 wind 7e+00 43200 > th dose dependent rect. 5 10
290 252.65 wind 9e+00 43200 > th dose dependent rect. 17 8
304 252.78 wind 7e+00 43200 > th dose dependent sin 1 NA
315 252.88 wind 9e+00 43200 > th dose independent rect. 8 19
319 252.91 wind 9e+00 43200 > th dose independent rect. 8 17
325 252.95 wind 9e+00 43200 > th dose independent rect. 8 22
326 252.96 wind 9e+00 43200 > th dose independent rect. 17 8
373 253.21 wind 9e+00 43200 > th dose independent rect. 22 23
387 253.30 wind 9e+00 43200 > th dose independent rect. 5 20
392 253.31 wind 9e+00 43200 > th dose independent rect. 24 23
396 253.33 wind 9e+00 43200 > th dose independent rect. 13 23
398 253.34 wind 9e+00 43200 > th dose independent rect. 17 14
403 253.36 wind 9e+00 43200 > th dose independent rect. 13 20
404 253.36 wind 9e+00 43200 > th dose independent rect. 2 23
419 253.42 wind 9e+00 43200 > th dose independent rect. 24 21
433 253.45 wind 9e+00 43200 > th dose independent no NA NA
445 253.49 wind 7e+00 43200 > th dose independent rect. 22 18
468 253.57 wind 7e+00 43200 > th dose dependent rect. 9 5
487 253.64 precipitation 1e-01 43200 > th dose dependent rect. 19 2
508 253.76 wind 7e+00 43200 < th dose independent rect. 22 18
553 253.93 wind 3e+00 43200 > th dose dependent rect. 3 13
574 254.01 temperature 3e+01 270 < th dose dependent rect. 7 21
586 254.05 wind 7e+00 43200 > th dose independent sin 4 NA
592 254.07 wind 3e+00 43200 > th dose dependent rect. 4 11
594 254.08 wind 9e+00 43200 < th dose independent rect. 17 8
607 254.13 wind 9e+00 43200 < th dose independent rect. 17 14
628 254.21 humidity 6e+01 14400 < th dose independent rect. 17 2
730 254.61 wind 7e+00 43200 < th dose independent sin 4 NA
774 254.75 atmosphere 1e+03 43200 < th dose dependent rect. 14 2
784 254.80 atmosphere 1e+03 43200 < th dose independent rect. 14 1
830 255.00 temperature 1e+01 270 > th dose dependent rect. 22 23
930 255.40 atmosphere 1e+03 43200 > th dose independent rect. 14 1
971 255.61 humidity 6e+01 14400 < th dose independent rect. 17 15