Os06g0536200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0536200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199.97 | 0.664 | 4.66 | 0.326 | 1.16 | -0.694 | 0.277 | 0.139 | 0.199 | 18.9 | 22 | 683 | -- | -- |
| 200.02 | 0.659 | 4.67 | 0.284 | 1.16 | -0.697 | 0.347 | -- | 0.189 | 18.9 | 21.91 | 686 | -- | -- |
| 200.13 | 0.659 | 4.66 | 0.35 | 1.17 | -0.691 | -- | 0.23 | 0.206 | 18.8 | 21.96 | 682 | -- | -- |
| 200.31 | 0.659 | 4.67 | 0.279 | 1.17 | -0.695 | -- | -- | 0.189 | 18.8 | 21.92 | 682 | -- | -- |
| 263.05 | 0.755 | 4.65 | 0.183 | -- | -0.66 | -- | -0.279 | 0.126 | -- | 22.2 | 1388 | -- | -- |
| 220.72 | 0.696 | 4.71 | 0.0483 | 1.05 | -- | 0.261 | -- | -0.0322 | 18.6 | -- | -- | -- | -- |
| 220.88 | 0.696 | 4.71 | 0.0448 | 1.05 | -- | -- | -- | -0.0312 | 18.5 | -- | -- | -- | -- |
| 263.36 | 0.756 | 4.64 | 0.268 | -- | -0.64 | -- | -- | 0.162 | -- | 22.18 | 1398 | -- | -- |
| 202.21 | 0.662 | 4.67 | -- | 1.15 | -0.633 | -- | -- | 0.146 | 18.8 | 22.1 | 673 | -- | -- |
| 278.77 | 0.78 | 4.69 | 0.0189 | -- | -- | -- | -- | -0.0529 | -- | -- | -- | -- | -- |
| 220.93 | 0.695 | 4.71 | -- | 1.05 | -- | -- | -- | -0.0362 | 18.5 | -- | -- | -- | -- |
| 264.16 | 0.757 | 4.65 | -- | -- | -0.621 | -- | -- | 0.149 | -- | 24.5 | 1293 | -- | -- |
| 278.78 | 0.779 | 4.69 | -- | -- | -- | -- | -- | -0.055 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 189.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 7 | 190.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 32 | 191.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 7 |
| 67 | 193.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 103 | 194.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 105 | 194.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 24 | 17 |
| 113 | 195.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 125 | 195.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 127 | 195.51 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 163 | 196.20 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 1 |
| 211 | 197.06 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 5 |
| 287 | 198.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 322 | 198.66 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 9 |
| 335 | 198.86 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 374 | 199.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 401 | 199.50 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 407 | 199.57 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 441 | 199.98 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 458 | 200.14 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 462 | 200.17 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 8 |
| 473 | 200.25 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 483 | 200.30 | temperature | 10 | 10 | > th | dose dependent | sin | 5 | NA |
| 499 | 200.40 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 7 |
| 536 | 200.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 9 |
| 598 | 201.05 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 620 | 201.18 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 630 | 201.23 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 634 | 201.26 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 647 | 201.38 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 12 |
| 680 | 201.55 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 686 | 201.58 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 717 | 201.76 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 3 |
| 721 | 201.76 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 16 |
| 839 | 202.49 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 850 | 202.52 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 935 | 202.92 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 953 | 202.99 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 17 |
| 987 | 203.14 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 5 |
| 996 | 203.18 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |