Os06g0535400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-).
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Os06g0535400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.81 | 0.531 | 9.56 | -0.346 | 1.18 | 1.81 | 1.37 | 0.338 | 0.475 | 22.7 | 39.03 | 10 | -- | -- |
| 127.76 | 0.526 | 9.56 | -0.353 | 1.2 | 1.79 | 1.62 | -- | 0.468 | 22.7 | 38.98 | 7 | -- | -- |
| 130.49 | 0.532 | 9.56 | -0.357 | 1.14 | 1.8 | -- | 1.45 | 0.468 | 22.7 | 37.22 | 8 | -- | -- |
| 138.67 | 0.548 | 9.56 | -0.412 | 1.14 | 1.84 | -- | -- | 0.467 | 22.7 | 38.37 | 8 | -- | -- |
| 140.87 | 0.553 | 9.54 | -0.38 | -- | 2.3 | -- | 1.27 | 0.453 | -- | 20 | 5 | -- | -- |
| 186.28 | 0.64 | 9.59 | -0.405 | 2.52 | -- | 1.78 | -- | 0.456 | 23.5 | -- | -- | -- | -- |
| 199.87 | 0.662 | 9.59 | -0.478 | 2.51 | -- | -- | -- | 0.448 | 23.5 | -- | -- | -- | -- |
| 149.55 | 0.57 | 9.54 | -0.423 | -- | 2.32 | -- | -- | 0.448 | -- | 20.48 | 5 | -- | -- |
| 143.12 | 0.557 | 9.55 | -- | 1.12 | 1.85 | -- | -- | 0.514 | 22.6 | 37.81 | 8 | -- | -- |
| 594.81 | 1.14 | 9.53 | -0.411 | -- | -- | -- | -- | 0.475 | -- | -- | -- | -- | -- |
| 205.89 | 0.671 | 9.58 | -- | 2.5 | -- | -- | -- | 0.502 | 23.5 | -- | -- | -- | -- |
| 154.16 | 0.578 | 9.53 | -- | -- | 2.34 | -- | -- | 0.496 | -- | 21.29 | 5 | -- | -- |
| 599.26 | 1.14 | 9.52 | -- | -- | -- | -- | -- | 0.521 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.69 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 2 | 126.64 | radiation | 10 | 10 | < th | dose dependent | sin | 0 | NA |
| 3 | 126.82 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 6 | 127.82 | radiation | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 8 | 128.06 | radiation | 40 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 10 | 128.38 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 14 | 128.54 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 19 | 128.99 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 17 |
| 20 | 129.20 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 52 | 131.17 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 53 | 131.20 | radiation | 40 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 61 | 131.54 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 18 |
| 73 | 132.14 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 19 |
| 90 | 132.94 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 141 | 133.79 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 260 | 134.93 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 11 |
| 300 | 135.35 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 314 | 135.64 | radiation | 1 | 10 | > th | dose dependent | sin | 1 | NA |
| 320 | 135.75 | radiation | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 328 | 135.88 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 362 | 136.50 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 380 | 137.03 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 388 | 137.24 | radiation | 1 | 90 | > th | dose dependent | sin | 2 | NA |
| 405 | 137.37 | radiation | 30 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 406 | 137.37 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 407 | 137.43 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 529 | 138.12 | radiation | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 538 | 138.25 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 7 |
| 566 | 138.36 | radiation | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 623 | 139.01 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 23 |
| 686 | 139.65 | radiation | 20 | 10 | < th | dose independent | rect. | 16 | 23 |
| 688 | 139.68 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 13 |
| 722 | 139.90 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 11 |
| 763 | 140.21 | radiation | 30 | 270 | < th | dose dependent | rect. | 24 | 14 |
| 770 | 140.31 | radiation | 20 | 10 | < th | dose independent | sin | 1 | NA |
| 784 | 140.41 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 809 | 140.59 | radiation | 20 | 10 | < th | dose independent | rect. | 11 | 23 |
| 831 | 140.76 | radiation | 20 | 10 | < th | dose independent | rect. | 13 | 23 |
| 836 | 140.80 | radiation | 30 | 270 | < th | dose independent | rect. | 23 | 10 |
| 845 | 140.90 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 22 |
| 860 | 140.96 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 12 |
| 867 | 141.04 | radiation | 20 | 10 | < th | dose independent | no | NA | NA |
| 955 | 141.42 | radiation | 30 | 10 | < th | dose dependent | rect. | 10 | 10 |