Os06g0535300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AFL190Cp.
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Os06g0535300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AFL190Cp.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.56 | 0.185 | 12 | 0.941 | 0.252 | 0.657 | 0.421 | -0.154 | 0.287 | 22.8 | 80 | 1363 | -- | -- |
| 15.58 | 0.184 | 12 | 0.937 | 0.256 | 0.657 | 0.424 | -- | 0.285 | 22.8 | 80 | 1358 | -- | -- |
| 16.29 | 0.188 | 12 | 0.927 | 0.252 | 0.645 | -- | -0.179 | 0.286 | 22.6 | 80.1 | 1358 | -- | -- |
| 16.32 | 0.188 | 12 | 0.912 | 0.251 | 0.637 | -- | -- | 0.283 | 22.6 | 80.49 | 1363 | -- | -- |
| 19.52 | 0.206 | 12 | 0.924 | -- | 0.69 | -- | -0.158 | 0.285 | -- | 80.69 | 1474 | -- | -- |
| 20.94 | 0.215 | 12 | 0.913 | 0.246 | -- | 0.378 | -- | 0.244 | 22.1 | -- | -- | -- | -- |
| 21.5 | 0.217 | 12 | 0.899 | 0.245 | -- | -- | -- | 0.244 | 22 | -- | -- | -- | -- |
| 19.54 | 0.206 | 12 | 0.911 | -- | 0.682 | -- | -- | 0.282 | -- | 80.34 | 1482 | -- | -- |
| 35.49 | 0.277 | 12 | -- | 0.38 | 0.657 | -- | -- | 0.222 | 22.3 | 83.01 | 2382 | -- | -- |
| 25.11 | 0.234 | 12 | 0.902 | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
| 42.79 | 0.306 | 12 | -- | 0.249 | -- | -- | -- | 0.144 | 22.2 | -- | -- | -- | -- |
| 40.64 | 0.297 | 12 | -- | -- | 0.651 | -- | -- | 0.257 | -- | 82.58 | 2927 | -- | -- |
| 46.55 | 0.318 | 12 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.32 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 2 | 15.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 4 | 15.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 21 | 15.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 39 | 15.46 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 42 | 15.48 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 53 | 15.51 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 103 | 15.59 | humidity | 70 | 1440 | > th | dose dependent | sin | 21 | NA |
| 174 | 15.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 175 | 15.67 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 200 | 15.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 215 | 15.72 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 261 | 15.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 275 | 15.78 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 278 | 15.79 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 299 | 15.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 330 | 15.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 377 | 15.91 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 397 | 15.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 406 | 15.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 414 | 15.95 | humidity | 70 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 494 | 16.01 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 514 | 16.04 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 545 | 16.07 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 587 | 16.10 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 622 | 16.11 | humidity | 70 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 624 | 16.12 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 675 | 16.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 686 | 16.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 729 | 16.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 739 | 16.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 798 | 16.21 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 821 | 16.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 858 | 16.24 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 859 | 16.24 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 933 | 16.27 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 978 | 16.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 3 |