Os06g0534800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os06g0534800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 315.58 | 0.835 | 5.74 | -6.22 | 0.871 | 3.03 | 0.22 | -10.6 | -0.337 | 22.4 | 26.68 | 1266 | -- | -- |
| 345.77 | 0.866 | 5.49 | -3.75 | 0.837 | 2.06 | 0.144 | -- | -0.154 | 22.4 | 22.54 | 1214 | -- | -- |
| 315.73 | 0.828 | 5.74 | -6.21 | 0.876 | 3.03 | -- | -10.6 | -0.33 | 22.3 | 26.72 | 1268 | -- | -- |
| 345.07 | 0.865 | 5.51 | -3.79 | 0.846 | 2.09 | -- | -- | -0.207 | 22.1 | 22.7 | 1215 | -- | -- |
| 347.66 | 0.868 | 5.68 | -5.73 | -- | 3.34 | -- | -9.16 | -0.41 | -- | 25.64 | 1067 | -- | -- |
| 489.61 | 1.04 | 5.42 | -3.09 | 1.13 | -- | 0.447 | -- | 0.21 | 23.1 | -- | -- | -- | -- |
| 490.41 | 1.04 | 5.42 | -3.1 | 1.13 | -- | -- | -- | 0.209 | 23 | -- | -- | -- | -- |
| 367.91 | 0.893 | 5.5 | -3.84 | -- | 2.57 | -- | -- | -0.242 | -- | 22.58 | 978 | -- | -- |
| 671.52 | 1.21 | 5.29 | -- | 0.838 | 1.26 | -- | -- | 0.706 | 22.6 | 28.56 | 1172 | -- | -- |
| 570.41 | 1.12 | 5.4 | -3.08 | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
| 744.35 | 1.28 | 5.35 | -- | 1.11 | -- | -- | -- | 0.554 | 22.8 | -- | -- | -- | -- |
| 717.34 | 1.25 | 5.29 | -- | -- | 1.61 | -- | -- | 0.661 | -- | 27.59 | 1058 | -- | -- |
| 820.37 | 1.34 | 5.32 | -- | -- | -- | -- | -- | 0.559 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 313.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 315.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 18 | 318.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 42 | 320.81 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 66 | 322.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 68 | 322.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 108 | 323.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 109 | 323.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 162 | 324.61 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 210 | 325.84 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 247 | 326.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 251 | 326.45 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 258 | 326.66 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 268 | 327.43 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 273 | 327.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 13 |
| 304 | 328.54 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 18 |
| 314 | 328.88 | wind | 5 | 43200 | > th | dose dependent | sin | 0 | NA |
| 350 | 329.42 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 353 | 329.48 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 416 | 330.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 452 | 330.95 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 487 | 331.29 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 495 | 331.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 510 | 331.53 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 531 | 331.78 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 554 | 332.04 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 555 | 332.04 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 557 | 332.07 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 563 | 332.11 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 566 | 332.14 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 573 | 332.24 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 580 | 332.30 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 593 | 332.39 | wind | 5 | 43200 | < th | dose independent | sin | 1 | NA |
| 598 | 332.43 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 643 | 332.71 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 650 | 332.74 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 654 | 332.76 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 711 | 333.23 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 740 | 333.44 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 760 | 333.59 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 22 |
| 814 | 333.83 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 819 | 333.86 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 858 | 334.07 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 912 | 334.31 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 919 | 334.32 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 23 |