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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0534200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0324) R2 : 0.158
β1 : 0.708 (0.131) R2dD : 0.0755 R2D : -0.0507
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.25 (0.316) R2dE : 0.314 R2E : -0.378
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 17.6 (1.94) R2dD*E : 0.539 R2D*E : -0.195
γ1 : -0.0382 (0.067) R2dN8 : 0.000677 R2N8 : -0.0153
σ : 0.583
deviance : 156.89
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.969
memory length : 92
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.96
open length of G : 1.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154 0.583 2.84 0.718 0.211 -2.28 -0.148 17.7 -0.035 23.8 0.98 93 4 1.05
182.23 0.634 2.91 0.149 0.0509 -0.146 -1.09 -- -0.02 18.8 0.98 93 4 1.05
154.06 0.578 2.84 0.724 0.219 -2.3 -- 17.7 -0.0385 0.14 0.9784 92 3.98 1.06
182.32 0.633 2.92 0.169 0.223 -0.241 -- -- -0.04 0.887 2.047 76 3.09 3.46
156.89 0.583 2.84 0.708 -- -2.25 -- 17.6 -0.0382 -- 0.969 92 3.96 1.07
182.32 0.633 2.91 0.146 0.0654 -- -1.06 -- -0.018 19 -- -- -- --
182.89 0.633 2.92 0.158 0.203 -- -- -- -0.0246 24 -- -- -- --
184.42 0.632 2.92 0.172 -- -0.345 -- -- -0.0357 -- 1.2 28 3.41 3.91
183.07 0.634 2.92 -- 0.224 -0.221 -- -- -0.0574 0.853 2.047 76 3.09 3.46
185.48 0.636 2.91 0.164 -- -- -- -- -0.0218 -- -- -- -- --
183.55 0.634 2.92 -- 0.205 -- -- -- -0.0422 0.0379 -- -- -- --
185.22 0.634 2.92 -- -- -0.326 -- -- -0.0524 -- 1.2 28 3.45 3.93
186.19 0.637 2.92 -- -- -- -- -- -0.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.26 wind 1.0 90 < th dose dependent rect. 4 1
2 155.45 wind 1.0 90 < th dose independent rect. 4 1
4 166.88 wind 1.0 90 < th dose independent rect. 16 1
5 166.88 wind 1.0 90 < th dose dependent rect. 16 1
14 168.76 temperature 15.0 30 > th dose independent rect. 3 23
17 169.20 temperature 25.0 90 > th dose dependent rect. 2 1
19 169.53 temperature 25.0 90 > th dose independent rect. 2 1
20 169.55 wind 1.0 90 < th dose dependent rect. 4 5
22 169.74 atmosphere 1000.0 30 > th dose independent rect. 3 23
28 170.52 wind 1.0 10 < th dose independent rect. 2 1
29 170.62 wind 3.0 10 < th dose dependent rect. 2 1
31 170.67 atmosphere 1010.0 30 < th dose dependent rect. 2 1
32 170.69 humidity 90.0 10 > th dose independent rect. 2 1
35 170.73 temperature 20.0 10 > th dose dependent rect. 2 1
40 170.76 humidity 80.0 30 > th dose dependent rect. 2 1
53 170.80 temperature 25.0 30 < th dose independent rect. 2 1
60 170.81 temperature 10.0 30 > th dose independent rect. 2 1
64 170.81 humidity 50.0 30 > th dose independent rect. 2 1
67 170.81 atmosphere 995.0 30 > th dose independent rect. 2 1
69 170.81 atmosphere 1010.0 30 < th dose independent rect. 2 1
71 170.81 radiation 1.0 30 < th dose independent rect. 2 1
76 170.81 precipitation 0.1 30 < th dose independent rect. 2 1
81 170.81 radiation 1.0 30 < th dose dependent rect. 2 1
86 170.81 precipitation 0.1 30 < th dose dependent rect. 2 1
89 170.82 atmosphere 995.0 30 > th dose dependent rect. 2 1
90 170.82 atmosphere 1005.0 30 > th dose dependent rect. 2 1
93 170.85 wind 9.0 1440 < th dose independent rect. 3 1
94 170.85 temperature 10.0 1440 > th dose independent rect. 3 1
97 170.85 temperature 30.0 1440 < th dose independent rect. 3 1
101 170.85 humidity 50.0 1440 > th dose independent rect. 3 1
110 170.85 atmosphere 995.0 1440 > th dose independent rect. 3 1
111 170.85 radiation 1.0 1440 < th dose independent rect. 3 1
131 170.85 temperature 10.0 1440 > th dose independent rect. 4 23
136 170.85 radiation 1.0 1440 < th dose dependent rect. 3 1
155 170.88 temperature 30.0 30 < th dose dependent rect. 2 1
161 170.92 precipitation 0.1 30 < th dose independent rect. 3 23
162 170.92 precipitation 0.1 30 < th dose dependent rect. 3 23
195 171.10 wind 1.0 30 > th dose independent rect. 2 1
211 172.26 humidity 90.0 10 > th dose dependent rect. 6 1
218 172.55 wind 1.0 90 < th dose dependent rect. 4 12
219 172.57 wind 1.0 90 < th dose dependent rect. 4 14
225 172.65 humidity 80.0 90 < th dose dependent rect. 19 1
229 172.85 humidity 50.0 30 > th dose independent rect. 3 23
233 172.89 radiation 1.0 90 < th dose dependent rect. 5 10
235 172.91 wind 9.0 30 < th dose independent rect. 3 23
237 172.94 humidity 90.0 720 < th dose independent rect. 13 2
239 172.95 radiation 1.0 90 < th dose dependent rect. 5 5
241 172.96 radiation 1.0 90 < th dose dependent rect. 5 3
247 173.04 atmosphere 1005.0 90 > th dose dependent rect. 5 1
257 173.41 atmosphere 1005.0 270 < th dose dependent rect. 16 2
265 173.62 radiation 1.0 90 < th dose independent rect. 5 2
272 173.73 radiation 1.0 90 < th dose independent rect. 5 10
273 173.76 radiation 1.0 90 < th dose independent rect. 5 8
284 173.95 humidity 90.0 720 < th dose independent rect. 11 4
288 173.98 temperature 25.0 270 > th dose independent rect. 23 4
292 174.02 wind 9.0 720 < th dose dependent rect. 15 2
294 174.06 atmosphere 1005.0 270 < th dose independent rect. 16 2
297 174.09 temperature 25.0 270 > th dose independent rect. 16 12
327 174.33 humidity 90.0 10 > th dose independent rect. 6 1
336 174.38 wind 3.0 720 > th dose independent rect. 14 1
352 174.46 wind 3.0 270 < th dose dependent rect. 14 5
355 174.49 humidity 60.0 270 < th dose independent rect. 16 1
357 174.51 temperature 25.0 270 > th dose independent sin 12 NA
359 174.51 wind 5.0 10 < th dose dependent rect. 11 16
369 174.57 radiation 30.0 43200 < th dose independent rect. 17 11
372 174.59 humidity 60.0 270 < th dose independent rect. 16 3
375 174.63 humidity 70.0 270 < th dose independent rect. 19 1
391 174.69 temperature 30.0 720 < th dose independent rect. 6 7
397 174.74 temperature 25.0 270 > th dose dependent rect. 23 7
405 174.80 temperature 25.0 270 > th dose dependent rect. 23 5
421 174.82 wind 1.0 10 < th dose independent rect. 11 16
424 174.83 temperature 25.0 270 > th dose independent rect. 23 1
427 174.84 wind 5.0 10 < th dose dependent rect. 13 14
435 174.87 wind 5.0 10 < th dose dependent rect. 17 10
437 174.88 wind 3.0 720 < th dose dependent rect. 11 6
440 174.90 precipitation 0.1 720 > th dose independent rect. 15 1
441 174.90 precipitation 0.1 720 > th dose dependent rect. 15 1
460 174.92 humidity 60.0 270 < th dose dependent rect. 16 3
462 174.94 wind 9.0 720 < th dose independent rect. 15 12
496 175.02 wind 3.0 720 < th dose independent rect. 11 6
502 175.02 temperature 10.0 30 > th dose dependent rect. 17 10
503 175.03 humidity 90.0 720 > th dose independent rect. 14 1
504 175.03 humidity 90.0 10 > th dose independent rect. 24 3
507 175.04 radiation 20.0 270 > th dose dependent rect. 16 1
521 175.05 wind 1.0 10 > th dose independent sin 9 NA
522 175.05 wind 3.0 720 < th dose independent rect. 13 4
554 175.09 wind 7.0 1440 < th dose independent rect. 6 2
564 175.13 temperature 30.0 270 < th dose independent sin 10 NA
583 175.20 temperature 20.0 30 > th dose dependent rect. 19 9
651 175.40 temperature 25.0 1440 < th dose independent rect. 22 5
657 175.42 wind 1.0 10 < th dose independent rect. 15 12
658 175.42 temperature 25.0 270 > th dose dependent rect. 23 1
659 175.43 wind 1.0 10 < th dose independent rect. 21 6
670 175.44 wind 1.0 10 > th dose independent rect. 20 10
686 175.45 wind 1.0 10 > th dose independent sin 18 NA
705 175.51 temperature 20.0 90 < th dose independent rect. 5 1
712 175.51 humidity 90.0 270 > th dose dependent rect. 14 1
715 175.52 temperature 20.0 10 < th dose independent rect. 5 1
729 175.53 temperature 25.0 90 > th dose dependent rect. 19 1
733 175.54 radiation 30.0 43200 < th dose independent rect. 17 13
742 175.56 radiation 30.0 720 < th dose independent rect. 17 16
769 175.61 humidity 90.0 30 > th dose dependent rect. 5 5
786 175.66 wind 3.0 720 > th dose independent rect. 11 4
787 175.66 wind 1.0 1440 < th dose dependent rect. 4 1
800 175.68 humidity 50.0 720 > th dose independent rect. 3 12
807 175.70 wind 9.0 720 < th dose independent rect. 5 15
827 175.73 temperature 30.0 90 < th dose independent rect. 3 13
832 175.74 wind 5.0 30 < th dose independent rect. 17 10
835 175.75 temperature 15.0 720 > th dose independent rect. 18 6
851 175.78 wind 1.0 10 < th dose independent rect. 8 19
861 175.80 wind 9.0 720 < th dose independent rect. 1 17
871 175.82 wind 1.0 10 < th dose independent rect. 6 21
878 175.83 temperature 25.0 4320 > th dose independent rect. 1 1
884 175.84 temperature 25.0 4320 < th dose independent rect. 1 1
886 175.84 temperature 25.0 1440 > th dose independent rect. 22 5
921 175.91 temperature 30.0 720 < th dose independent rect. 1 8
923 175.91 radiation 1.0 90 < th dose independent rect. 5 22
933 175.93 wind 1.0 10 > th dose independent rect. 20 14
940 175.94 wind 9.0 720 < th dose independent rect. 8 9
960 175.97 temperature 20.0 90 > th dose independent rect. 3 13
969 175.98 wind 3.0 10 > th dose independent rect. 20 23
978 176.00 temperature 20.0 720 > th dose dependent rect. 15 2
989 176.02 radiation 1.0 90 < th dose independent rect. 3 23