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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0531000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 17 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.51 (0.0359) R2 : 0.463
β1 : -1.43 (0.132) R2dD : 0.145 R2D : 0.141
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.48 (0.0958) R2dE : 0.282 R2E : 0.238
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.433 (0.0767) R2dN8 : 0.0504 R2N8 : 0.0565
σ : 0.672
deviance : 207.89
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 10.44
memory length : 4
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.53
open length of G : 12.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.55 0.64 3.52 -1.49 0.533 1.22 -1.71 -0.779 0.4 4.42 9.999 8 3.2 12.1
186.53 0.636 3.51 -1.46 0.541 1.2 -2.07 -- 0.405 4.49 9.623 7 3.23 12.3
191.2 0.644 3.51 -1.53 0.558 1.17 -- -1.6 0.411 4.9 10 7 3.3 11.7
197.27 0.654 3.5 -1.44 0.618 1.13 -- -- 0.429 5.14 8.399 6 3.25 12.7
201.63 0.661 3.52 -1.51 -- 1.53 -- -1.65 0.425 -- 10.42 4 3.6 12
231.16 0.713 3.51 -1.39 1.23 -- -1.68 -- 0.341 4.97 -- -- -- --
238.25 0.723 3.51 -1.39 1.22 -- -- -- 0.35 5.13 -- -- -- --
207.89 0.672 3.51 -1.43 -- 1.48 -- -- 0.433 -- 10.44 4 3.53 12.2
250.58 0.737 3.48 -- 0.657 1.07 -- -- 0.527 4.9 6.976 6 3.32 12.6
316.53 0.831 3.52 -1.35 -- -- -- -- 0.381 -- -- -- -- --
289.11 0.795 3.47 -- 1.2 -- -- -- 0.505 5.17 -- -- -- --
261.45 0.753 3.47 -- -- 1.41 -- -- 0.585 -- 11.73 4 3.25 12.6
364.3 0.891 3.49 -- -- -- -- -- 0.53 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.01 radiation 10.0 10 < th dose dependent rect. 3 12
3 188.83 wind 3.0 30 < th dose dependent rect. 3 2
5 189.43 radiation 10.0 10 < th dose dependent rect. 3 8
10 190.13 humidity 80.0 30 > th dose dependent rect. 3 2
20 192.31 humidity 80.0 30 > th dose independent rect. 3 2
21 192.65 wind 9.0 30 < th dose independent rect. 5 22
26 193.06 radiation 1.0 30 < th dose independent rect. 3 15
27 193.08 temperature 15.0 30 > th dose independent rect. 5 22
28 193.21 temperature 10.0 30 > th dose dependent rect. 3 2
30 193.30 temperature 20.0 30 > th dose independent rect. 3 2
35 193.77 precipitation 0.1 30 < th dose independent rect. 3 2
36 193.77 precipitation 0.1 30 < th dose dependent rect. 3 2
37 193.91 wind 3.0 30 < th dose independent rect. 3 2
38 193.97 wind 7.0 30 < th dose independent rect. 3 2
42 194.11 temperature 10.0 30 > th dose independent rect. 3 2
44 194.11 temperature 30.0 30 < th dose independent rect. 3 2
45 194.11 humidity 50.0 30 > th dose independent rect. 3 2
48 194.11 atmosphere 995.0 30 > th dose independent rect. 3 2
49 194.11 atmosphere 1010.0 30 < th dose independent rect. 3 2
51 194.11 radiation 1.0 30 < th dose independent rect. 3 2
57 194.12 radiation 20.0 30 < th dose dependent rect. 3 2
70 194.34 precipitation 0.1 30 < th dose independent rect. 5 22
71 194.34 precipitation 0.1 30 < th dose dependent rect. 5 22
76 194.40 radiation 1.0 30 < th dose independent rect. 3 13
83 194.73 radiation 1.0 30 < th dose independent rect. 3 9
87 194.77 radiation 1.0 30 < th dose independent rect. 3 5
109 195.83 temperature 20.0 30 > th dose independent rect. 3 16
110 195.83 atmosphere 995.0 30 > th dose independent rect. 5 22
115 196.02 atmosphere 1015.0 30 < th dose dependent rect. 3 2
174 197.04 radiation 10.0 10 < th dose dependent rect. 3 23
176 197.11 radiation 10.0 10 < th dose dependent sin 2 NA
196 197.52 atmosphere 995.0 30 > th dose dependent rect. 3 2
204 197.66 atmosphere 1015.0 30 < th dose independent rect. 5 22
233 197.89 wind 3.0 10 < th dose dependent rect. 3 4
278 198.82 humidity 80.0 270 > th dose dependent rect. 24 4
288 199.13 wind 9.0 30 < th dose dependent rect. 5 22
303 199.42 humidity 90.0 270 > th dose independent rect. 24 4
307 199.55 temperature 20.0 270 > th dose independent rect. 24 5
311 199.68 temperature 20.0 30 > th dose independent rect. 3 4
329 200.02 wind 1.0 90 > th dose independent rect. 3 1
336 200.21 temperature 15.0 30 > th dose independent rect. 19 8
341 200.33 humidity 70.0 30 > th dose dependent rect. 3 6
345 200.40 temperature 25.0 270 < th dose independent rect. 24 4
348 200.54 temperature 20.0 30 > th dose independent rect. 3 6
354 200.66 precipitation 0.1 30 < th dose independent rect. 19 8
355 200.66 precipitation 0.1 30 < th dose dependent rect. 19 8
360 200.73 humidity 50.0 30 > th dose independent rect. 5 22
362 200.79 wind 9.0 30 < th dose independent rect. 19 8
365 200.82 temperature 30.0 30 < th dose independent rect. 19 8
366 200.82 humidity 50.0 30 > th dose independent rect. 19 8
368 200.82 atmosphere 995.0 30 > th dose independent rect. 19 8
369 200.82 radiation 1.0 30 < th dose independent rect. 19 8
374 200.82 temperature 10.0 30 > th dose independent rect. 3 16
376 200.82 atmosphere 1015.0 30 < th dose independent rect. 3 16
378 200.82 radiation 1.0 30 < th dose dependent rect. 19 8
389 200.93 precipitation 0.1 30 < th dose independent rect. 3 16
390 200.93 precipitation 0.1 30 < th dose dependent rect. 3 16
416 201.52 atmosphere 995.0 30 > th dose independent rect. 3 16
424 201.62 wind 9.0 10 < th dose dependent rect. 19 8
464 201.83 wind 3.0 10 < th dose dependent rect. 3 6
471 201.90 wind 9.0 10 < th dose dependent rect. 16 11
479 201.97 humidity 50.0 30 > th dose independent rect. 3 16
482 201.99 temperature 10.0 30 > th dose dependent rect. 19 8
498 202.13 temperature 25.0 30 < th dose dependent rect. 4 1
503 202.23 temperature 20.0 270 > th dose independent rect. 24 17
540 202.79 radiation 1.0 30 < th dose independent sin 2 NA
542 202.81 wind 9.0 30 < th dose independent rect. 3 16
546 202.86 wind 9.0 1440 < th dose independent rect. 4 2
547 202.86 temperature 10.0 1440 > th dose independent rect. 4 2
550 202.86 temperature 30.0 1440 < th dose independent rect. 4 2
554 202.86 humidity 50.0 1440 > th dose independent rect. 4 2
563 202.86 atmosphere 995.0 1440 > th dose independent rect. 4 2
564 202.86 atmosphere 1015.0 1440 < th dose independent rect. 4 2
565 202.86 radiation 20.0 1440 < th dose independent rect. 4 2
574 202.86 temperature 10.0 1440 > th dose independent rect. 6 22
636 203.51 humidity 80.0 10 > th dose independent rect. 3 5
639 203.54 atmosphere 1015.0 30 < th dose independent rect. 19 8
642 203.56 temperature 10.0 270 > th dose dependent rect. 24 5
658 203.71 radiation 1.0 30 > th dose independent sin 2 NA
708 204.16 radiation 10.0 10 < th dose dependent rect. 3 19
745 204.34 humidity 50.0 30 > th dose dependent rect. 3 16
747 204.34 radiation 10.0 10 < th dose dependent rect. 21 23
773 204.58 humidity 90.0 90 > th dose dependent rect. 19 10
791 204.67 wind 5.0 30 < th dose independent rect. 16 11
792 204.68 atmosphere 1000.0 270 > th dose independent rect. 24 5
825 204.90 humidity 50.0 270 > th dose independent rect. 24 16
828 204.90 radiation 10.0 270 < th dose dependent rect. 24 16
829 204.92 humidity 80.0 10 > th dose dependent rect. 3 15
845 205.02 wind 9.0 270 < th dose independent rect. 16 8
879 205.08 precipitation 0.1 270 < th dose independent rect. 16 8
880 205.08 precipitation 0.1 270 < th dose dependent rect. 16 8
889 205.11 wind 1.0 270 > th dose independent rect. 16 8
890 205.11 radiation 40.0 30 < th dose independent rect. 12 17
894 205.13 humidity 80.0 10 > th dose dependent rect. 3 11
899 205.16 radiation 30.0 270 < th dose independent rect. 16 8
907 205.18 temperature 10.0 270 > th dose independent rect. 16 8
909 205.18 temperature 10.0 270 > th dose independent rect. 24 16
914 205.19 atmosphere 1015.0 270 < th dose independent rect. 24 16
924 205.24 wind 3.0 30 < th dose independent rect. 3 4
932 205.27 wind 9.0 270 < th dose independent rect. 5 19
943 205.28 atmosphere 995.0 270 > th dose independent rect. 24 16
959 205.39 humidity 90.0 90 > th dose dependent rect. 13 16
963 205.42 radiation 1.0 270 < th dose dependent rect. 24 5
974 205.49 temperature 10.0 30 > th dose dependent rect. 3 4
978 205.51 wind 9.0 30 < th dose independent rect. 5 9
997 205.62 radiation 1.0 270 < th dose independent rect. 24 18