Os06g0530600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
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Os06g0530600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VQ domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.2 | 0.566 | 8.46 | 1.25 | 0.534 | -3.17 | -0.112 | -0.109 | -0.0548 | 15.4 | 17.19 | 637 | -- | -- |
| 145.19 | 0.561 | 8.45 | 1.27 | 0.54 | -3.13 | -0.126 | -- | -0.0507 | 15.4 | 17.49 | 637 | -- | -- |
| 144.92 | 0.561 | 8.45 | 1.27 | 0.652 | -3.17 | -- | 0.0235 | -0.0397 | 15.4 | 17.5 | 584 | -- | -- |
| 144.9 | 0.561 | 8.45 | 1.26 | 0.684 | -3.17 | -- | -- | -0.0458 | 15.3 | 17.56 | 572 | -- | -- |
| 149.51 | 0.569 | 8.45 | 1.35 | -- | -3.11 | -- | 0.105 | -0.0502 | -- | 17 | 827 | -- | -- |
| 299.62 | 0.811 | 8.55 | 0.427 | 0.841 | -- | 0.288 | -- | -0.592 | 10 | -- | -- | -- | -- |
| 299.94 | 0.811 | 8.55 | 0.438 | 0.839 | -- | -- | -- | -0.591 | 10.1 | -- | -- | -- | -- |
| 149.46 | 0.569 | 8.45 | 1.32 | -- | -3.04 | -- | -- | -0.0465 | -- | 17.44 | 829 | -- | -- |
| 179.24 | 0.624 | 8.5 | -- | 0.841 | -2.6 | -- | -- | -0.264 | 14.6 | 19.6 | 466 | -- | -- |
| 342.46 | 0.865 | 8.57 | 0.427 | -- | -- | -- | -- | -0.592 | -- | -- | -- | -- | -- |
| 305 | 0.817 | 8.56 | -- | 0.837 | -- | -- | -- | -0.64 | 10 | -- | -- | -- | -- |
| 188.25 | 0.639 | 8.5 | -- | -- | -2.43 | -- | -- | -0.267 | -- | 19.54 | 789 | -- | -- |
| 347.28 | 0.87 | 8.58 | -- | -- | -- | -- | -- | -0.64 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 2 | 141.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 10 | 143.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 21 | 144.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 27 | 144.24 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 62 | 145.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 73 | 145.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 86 | 146.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 111 | 146.93 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 115 | 147.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 228 | 148.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 229 | 148.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 248 | 149.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 264 | 149.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 287 | 149.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 293 | 149.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 297 | 149.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 328 | 149.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 447 | 150.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 470 | 150.89 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 504 | 151.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 808 | 152.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 890 | 153.24 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |