Os06g0530300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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Os06g0530300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.07 | 0.231 | 11.4 | 1.38 | 0.858 | -0.7 | -0.17 | 1.42 | 0.178 | 20.7 | 15.49 | 5840 | -- | -- |
| 26.83 | 0.241 | 11.5 | 1.18 | 0.871 | -0.812 | -0.279 | -- | 0.184 | 20.8 | 12.32 | 11850 | -- | -- |
| 24.11 | 0.229 | 11.4 | 1.45 | 0.856 | -0.655 | -- | 1.64 | 0.2 | 20.7 | 17.49 | 5825 | -- | -- |
| 26.66 | 0.24 | 11.5 | 1.15 | 0.874 | -0.826 | -- | -- | 0.167 | 20.8 | 12.01 | 10881 | -- | -- |
| 65.89 | 0.378 | 11.4 | 1.47 | -- | -0.668 | -- | 1.69 | 0.199 | -- | 16.85 | 5819 | -- | -- |
| 37.7 | 0.288 | 11.5 | 0.64 | 0.861 | -- | -0.233 | -- | -0.101 | 20.7 | -- | -- | -- | -- |
| 37.88 | 0.288 | 11.5 | 0.647 | 0.861 | -- | -- | -- | -0.101 | 20.7 | -- | -- | -- | -- |
| 67.9 | 0.384 | 11.5 | 1.05 | -- | -0.841 | -- | -- | 0.0757 | -- | 8.599 | 5817 | -- | -- |
| 46.32 | 0.317 | 11.5 | -- | 0.898 | -0.288 | -- | -- | -0.128 | 20.8 | 21.22 | 2261 | -- | -- |
| 79.75 | 0.417 | 11.5 | 0.645 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 48.93 | 0.327 | 11.5 | -- | 0.86 | -- | -- | -- | -0.173 | 20.7 | -- | -- | -- | -- |
| 82.59 | 0.423 | 11.5 | -- | -- | 0.526 | -- | -- | -0.216 | -- | 24.6 | 596 | -- | -- |
| 90.73 | 0.445 | 11.5 | -- | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.01 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 6 | 23.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 7 | 23.39 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 8 | 23.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 10 | 23.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 16 | 23.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 17 | 23.55 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 26 | 23.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 28 | 23.63 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 17 |
| 29 | 23.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 36 | 23.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 49 | 23.69 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 68 | 23.72 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 17 |
| 69 | 23.72 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 89 | 23.81 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 108 | 23.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 112 | 23.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 129 | 23.86 | radiation | 1 | 43200 | < th | dose independent | sin | 12 | NA |
| 131 | 23.86 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 132 | 23.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 175 | 23.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 178 | 23.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 7 | 14 |
| 217 | 23.91 | radiation | 1 | 43200 | > th | dose independent | sin | 11 | NA |
| 268 | 23.92 | radiation | 1 | 43200 | > th | dose independent | sin | 7 | NA |
| 273 | 23.92 | radiation | 1 | 43200 | < th | dose independent | sin | 7 | NA |
| 321 | 23.94 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 323 | 23.95 | humidity | 90 | 43200 | < th | dose independent | sin | 21 | NA |
| 345 | 23.95 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 358 | 23.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 382 | 23.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 387 | 23.97 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 388 | 23.97 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 389 | 23.97 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 392 | 23.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 393 | 23.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 537 | 24.01 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 538 | 24.01 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 580 | 24.03 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 587 | 24.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 591 | 24.03 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 592 | 24.04 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 595 | 24.04 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 596 | 24.04 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 597 | 24.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 603 | 24.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 652 | 24.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 693 | 24.05 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 697 | 24.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 11 |
| 707 | 24.05 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 708 | 24.06 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 709 | 24.06 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 722 | 24.06 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 775 | 24.06 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 777 | 24.06 | wind | 3 | 43200 | > th | dose dependent | sin | 0 | NA |
| 786 | 24.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 11 |
| 818 | 24.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 835 | 24.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 845 | 24.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 894 | 24.08 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 902 | 24.08 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 905 | 24.08 | radiation | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 922 | 24.08 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 985 | 24.09 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 999 | 24.09 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 21 |