Os06g0529900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0529900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 538.27 | 1.09 | 6.42 | -5.3 | 1.76 | 2.89 | -2.28 | -8.35 | -1.46 | 2.46 | 26.6 | 1232 | -- | -- |
| 565.54 | 1.11 | 6.16 | -3.46 | 1.68 | 2.46 | -3.19 | -- | -0.8 | 2.61 | 27.55 | 1173 | -- | -- |
| 556.86 | 1.1 | 6.43 | -5.26 | 1.77 | 2.85 | -- | -8.39 | -1.48 | 2.49 | 26.45 | 1231 | -- | -- |
| 575.14 | 1.12 | 6.15 | -3.24 | 1.78 | 1.86 | -- | -- | -0.909 | 2.51 | 27.84 | 1229 | -- | -- |
| 714.39 | 1.24 | 6.45 | -5.18 | -- | 3.37 | -- | -7.35 | -1.77 | -- | 24.5 | 1154 | -- | -- |
| 713.87 | 1.25 | 6.17 | -2.74 | 2.09 | -- | -2.03 | -- | -1.02 | 2.22 | -- | -- | -- | -- |
| 729.21 | 1.26 | 6.17 | -2.68 | 2.09 | -- | -- | -- | -1.01 | 2.27 | -- | -- | -- | -- |
| 744.23 | 1.27 | 6.22 | -3.4 | -- | 2.64 | -- | -- | -1.26 | -- | 24.89 | 1157 | -- | -- |
| 833.67 | 1.34 | 6.06 | -- | 1.85 | 1.32 | -- | -- | -0.538 | 2.4 | 28.7 | 1220 | -- | -- |
| 988.27 | 1.47 | 6.15 | -2.59 | -- | -- | -- | -- | -0.957 | -- | -- | -- | -- | -- |
| 918.39 | 1.42 | 6.1 | -- | 2.04 | -- | -- | -- | -0.709 | 2.24 | -- | -- | -- | -- |
| 1020.77 | 1.49 | 6.05 | -- | -- | 1.77 | -- | -- | -0.528 | -- | 27.82 | 1177 | -- | -- |
| 1165.39 | 1.59 | 6.08 | -- | -- | -- | -- | -- | -0.669 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 550.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 3 | 551.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 7 | 551.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 10 | 551.94 | humidity | 70 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 28 | 552.31 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 84 | 554.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 86 | 555.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 88 | 555.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 103 | 555.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 121 | 555.65 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 141 | 555.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 21 |
| 166 | 556.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 167 | 556.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 170 | 556.49 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 176 | 556.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 196 | 557.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 209 | 557.44 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 213 | 557.52 | temperature | 30 | 1440 | < th | dose independent | sin | 18 | NA |
| 220 | 557.69 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 260 | 558.06 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 264 | 558.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 266 | 558.15 | temperature | 30 | 1440 | > th | dose independent | sin | 17 | NA |
| 303 | 558.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 306 | 558.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 311 | 558.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 315 | 558.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 324 | 558.66 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 331 | 558.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 400 | 559.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 417 | 559.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 422 | 559.38 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 423 | 559.39 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 441 | 559.42 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 483 | 559.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 554 | 559.84 | humidity | 50 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 567 | 560.23 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 678 | 560.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 21 |
| 687 | 560.54 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 691 | 560.55 | humidity | 70 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 727 | 560.76 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 757 | 560.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 772 | 561.25 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 807 | 561.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 16 |
| 891 | 562.68 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 16 |