Os06g0526700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phpsphatase 2C (PP2C) (EC 3.1.3.16).
FiT-DB / Search/ Help/ Sample detail
|
Os06g0526700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Protein phpsphatase 2C (PP2C) (EC 3.1.3.16).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.16 | 0.521 | 6.94 | -0.284 | 1.31 | -0.957 | -0.529 | -0.718 | 0.224 | 16.9 | 19.67 | 4037 | -- | -- |
| 123.75 | 0.518 | 6.96 | -0.371 | 1.31 | -0.788 | -0.569 | -- | 0.203 | 16.9 | 19.6 | 4098 | -- | -- |
| 123.87 | 0.518 | 6.94 | -0.276 | 1.31 | -0.951 | -- | -0.75 | 0.223 | 16.9 | 19.6 | 4053 | -- | -- |
| 123.77 | 0.518 | 6.96 | -0.328 | 1.31 | -0.751 | -- | -- | 0.214 | 16.9 | 20 | 2882 | -- | -- |
| 211.07 | 0.68 | 6.92 | -0.0969 | -- | -0.506 | -- | 0.026 | 0.284 | -- | 19.6 | 4053 | -- | -- |
| 133.83 | 0.542 | 6.92 | 0.0881 | 1.28 | -- | -0.486 | -- | 0.399 | 16.9 | -- | -- | -- | -- |
| 134.43 | 0.543 | 6.92 | 0.0867 | 1.28 | -- | -- | -- | 0.397 | 17 | -- | -- | -- | -- |
| 210 | 0.678 | 6.93 | -0.0596 | -- | -0.459 | -- | -- | 0.271 | -- | 20.7 | 1900 | -- | -- |
| 125.3 | 0.521 | 6.95 | -- | 1.31 | -0.553 | -- | -- | 0.267 | 16.9 | 20.7 | 2734 | -- | -- |
| 220.68 | 0.694 | 6.91 | 0.04 | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
| 134.63 | 0.543 | 6.92 | -- | 1.28 | -- | -- | -- | 0.387 | 17 | -- | -- | -- | -- |
| 210.09 | 0.677 | 6.93 | -- | -- | -0.452 | -- | -- | 0.278 | -- | 20.7 | 1900 | -- | -- |
| 220.72 | 0.693 | 6.91 | -- | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.84 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 2 | 113.95 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 4 | 114.21 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 7 | 114.40 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 17 | 114.83 | humidity | 90.0 | 30 | < th | dose independent | rect. | 2 | 6 |
| 18 | 114.84 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 35 | 115.95 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 2 | 5 |
| 36 | 115.98 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 47 | 116.34 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 55 | 116.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 59 | 116.77 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 61 | 116.78 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 9 |
| 68 | 116.92 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 69 | 116.94 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 77 | 117.10 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 78 | 117.10 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 83 | 117.21 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 104 | 117.54 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 111 | 117.65 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 119 | 117.79 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 139 | 118.15 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 141 | 118.17 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 147 | 118.23 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 150 | 118.27 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 154 | 118.32 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 155 | 118.33 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 157 | 118.35 | humidity | 90.0 | 30 | < th | dose independent | rect. | 16 | 16 |
| 165 | 118.43 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 167 | 118.45 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 180 | 118.49 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 181 | 118.50 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 188 | 118.55 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 189 | 118.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 192 | 118.63 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 194 | 118.64 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 205 | 118.73 | wind | 3.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 209 | 118.73 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 219 | 118.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 220 | 118.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 221 | 118.81 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 255 | 119.01 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 262 | 119.05 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 271 | 119.08 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 274 | 119.10 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 2 |
| 305 | 119.22 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 24 | 7 |
| 306 | 119.23 | wind | 3.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 313 | 119.27 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 320 | 119.30 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 324 | 119.33 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 326 | 119.34 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 332 | 119.37 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 333 | 119.37 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 348 | 119.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 349 | 119.42 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 352 | 119.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 362 | 119.45 | wind | 5.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 380 | 119.50 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 3 | 6 |
| 384 | 119.52 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 402 | 119.58 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 403 | 119.58 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 410 | 119.61 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 425 | 119.65 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 431 | 119.70 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 12 |
| 432 | 119.70 | wind | 3.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 437 | 119.72 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 439 | 119.72 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 457 | 119.76 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 465 | 119.78 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 467 | 119.78 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 468 | 119.78 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 471 | 119.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 472 | 119.78 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 473 | 119.78 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 477 | 119.78 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 484 | 119.79 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 11 |
| 494 | 119.82 | humidity | 90.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 496 | 119.82 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 514 | 119.88 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 539 | 119.95 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 557 | 119.99 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 10 |
| 560 | 120.00 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 581 | 120.04 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 10 |
| 582 | 120.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 587 | 120.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 628 | 120.13 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 637 | 120.15 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 652 | 120.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 654 | 120.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 655 | 120.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 657 | 120.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 658 | 120.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 659 | 120.18 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 660 | 120.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 665 | 120.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 19 |
| 668 | 120.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 686 | 120.22 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 688 | 120.22 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 724 | 120.29 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 767 | 120.36 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 5 |
| 772 | 120.37 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 777 | 120.38 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 788 | 120.39 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 838 | 120.48 | wind | 1.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 845 | 120.49 | temperature | 20.0 | 90 | < th | dose independent | rect. | 3 | 2 |
| 868 | 120.50 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 874 | 120.51 | humidity | 70.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 905 | 120.56 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 928 | 120.58 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 970 | 120.64 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 976 | 120.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 978 | 120.65 | wind | 3.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 993 | 120.67 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |