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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0524900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0185) R2 : 0.00932
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0806 (0.0389) R2dN8 : 0.012 R2N8 : 0.00932
σ : 0.348
deviance : 55.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.69 0.338 3.13 0.0245 0.0146 -0.278 0.437 1.38 0.0775 11.4 1 16 -- --
53.27 0.34 3.11 0.0773 0.00605 -0.183 0.521 -- 0.0919 12.4 1.1 16 -- --
52.47 0.337 3.13 0.0349 0.0193 -0.285 -- 1.58 0.07 8.4 1.013 16 -- --
54.34 0.346 3.11 0.105 0.06 -0.121 -- -- 0.0939 6.19 1.1 16 -- --
52.5 0.337 3.13 0.0379 -- -0.277 -- 1.52 0.0776 -- 1.076 16 -- --
54.08 0.345 3.11 0.102 0.0388 -- -0.514 -- 0.0904 1.31 -- -- -- --
54.8 0.347 3.11 0.118 0.0935 -- -- -- 0.0918 5.44 -- -- -- --
54.5 0.344 3.11 0.0987 -- -0.172 -- -- 0.0946 -- 1.044 16 -- --
54.62 0.344 3.11 -- 0.0571 -0.16 -- -- 0.0921 6.19 1.1 16 -- --
55.25 0.347 3.11 0.121 -- -- -- -- 0.0941 -- -- -- -- --
55.17 0.347 3.11 -- 0.0954 -- -- -- 0.0786 5.39 -- -- -- --
54.75 0.345 3.11 -- -- -0.185 -- -- 0.084 -- 1.068 16 -- --
55.64 0.348 3.11 -- -- -- -- -- 0.0806 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.06 temperature 25.0 90 > th dose dependent rect. 1 3
2 45.21 temperature 25.0 90 > th dose independent rect. 1 3
4 45.57 atmosphere 1005.0 90 > th dose dependent rect. 2 1
5 45.57 radiation 1.0 4320 < th dose dependent rect. 3 1
18 45.68 wind 9.0 1440 < th dose independent rect. 3 1
19 45.68 temperature 10.0 1440 > th dose independent rect. 3 1
22 45.68 temperature 30.0 1440 < th dose independent rect. 3 1
26 45.68 humidity 50.0 1440 > th dose independent rect. 3 1
35 45.68 atmosphere 995.0 1440 > th dose independent rect. 3 1
36 45.68 radiation 1.0 1440 < th dose independent rect. 3 1
56 45.68 temperature 10.0 1440 > th dose independent rect. 4 23
66 45.75 atmosphere 1005.0 30 > th dose independent rect. 2 1
69 45.76 temperature 25.0 90 > th dose independent rect. 2 1
70 45.77 wind 3.0 30 < th dose independent rect. 2 1
78 45.80 wind 5.0 30 < th dose dependent rect. 2 1
83 45.82 temperature 10.0 30 > th dose independent rect. 2 1
85 45.82 temperature 30.0 30 < th dose independent rect. 2 1
86 45.82 humidity 50.0 30 > th dose independent rect. 2 1
90 45.82 atmosphere 1010.0 30 < th dose independent rect. 2 1
92 45.82 radiation 1.0 30 < th dose independent rect. 2 1
97 45.82 precipitation 0.1 30 < th dose independent rect. 2 1
98 45.82 temperature 10.0 30 > th dose independent rect. 3 23
100 45.82 radiation 1.0 30 < th dose dependent rect. 2 1
105 45.82 precipitation 0.1 30 < th dose dependent rect. 2 1
107 45.84 humidity 50.0 30 > th dose dependent rect. 2 1
115 45.93 atmosphere 1015.0 30 < th dose dependent rect. 2 1
116 45.94 atmosphere 995.0 30 > th dose independent rect. 3 23
120 45.96 temperature 30.0 30 < th dose dependent rect. 2 1
121 45.98 wind 1.0 30 > th dose independent rect. 2 1
142 46.27 precipitation 0.1 30 < th dose independent rect. 3 23
144 46.27 precipitation 0.1 30 < th dose dependent rect. 3 23
175 46.44 wind 9.0 30 < th dose independent rect. 3 23
215 47.90 humidity 50.0 30 > th dose independent rect. 3 23
221 48.21 temperature 25.0 270 > th dose independent rect. 22 5
222 48.23 temperature 10.0 720 > th dose independent rect. 15 8
223 48.23 temperature 10.0 720 > th dose independent rect. 23 16
225 48.24 wind 9.0 720 < th dose independent rect. 3 8
227 48.25 temperature 10.0 720 > th dose independent rect. 3 8
228 48.25 atmosphere 995.0 720 > th dose independent rect. 3 8
229 48.25 temperature 10.0 720 > th dose independent rect. 11 16
236 48.41 atmosphere 1015.0 720 < th dose independent rect. 3 8
245 48.52 humidity 50.0 720 > th dose independent rect. 3 8
271 48.59 precipitation 0.1 720 < th dose independent rect. 15 8
272 48.59 precipitation 0.1 720 < th dose dependent rect. 15 8
274 48.66 atmosphere 995.0 720 > th dose independent rect. 23 16
300 48.96 humidity 90.0 90 < th dose independent rect. 2 1
303 49.04 radiation 40.0 720 < th dose independent rect. 15 8
305 49.10 precipitation 0.1 720 < th dose independent rect. 11 16
307 49.10 precipitation 0.1 720 < th dose dependent rect. 11 16
311 49.15 atmosphere 995.0 720 > th dose independent rect. 15 8
314 49.20 wind 3.0 30 < th dose dependent rect. 2 3
315 49.21 precipitation 0.1 720 < th dose independent rect. 3 8
317 49.21 precipitation 0.1 720 < th dose dependent rect. 3 8
321 49.27 atmosphere 995.0 720 > th dose independent rect. 11 16
335 49.48 precipitation 0.1 720 < th dose independent rect. 23 16
336 49.48 precipitation 0.1 720 < th dose dependent rect. 23 16
340 49.53 wind 9.0 720 < th dose independent rect. 15 8
366 49.77 temperature 10.0 30 > th dose dependent rect. 3 23
371 49.82 temperature 30.0 30 < th dose independent rect. 3 23
403 50.10 wind 9.0 720 < th dose independent rect. 23 16
406 50.12 humidity 90.0 90 < th dose independent rect. 1 4
412 50.15 atmosphere 1015.0 30 < th dose independent rect. 3 23
429 50.29 wind 1.0 10 > th dose independent rect. 23 23
450 50.41 wind 3.0 30 < th dose dependent rect. 2 6
454 50.44 wind 9.0 720 < th dose independent rect. 11 16
483 50.59 wind 9.0 10 < th dose independent rect. 5 21
486 50.59 temperature 25.0 720 > th dose dependent rect. 4 4
490 50.61 wind 1.0 10 < th dose independent rect. 17 10
492 50.61 wind 9.0 10 < th dose independent rect. 14 12
496 50.62 wind 1.0 10 < th dose independent rect. 21 6
533 50.67 radiation 40.0 30 < th dose independent rect. 14 12
552 50.73 atmosphere 1000.0 10 > th dose independent rect. 14 12
557 50.74 wind 9.0 1440 < th dose independent rect. 3 3
558 50.74 temperature 10.0 1440 > th dose independent rect. 3 3
561 50.74 temperature 30.0 1440 < th dose independent rect. 3 3
565 50.74 humidity 50.0 1440 > th dose independent rect. 3 3
574 50.74 atmosphere 995.0 1440 > th dose independent rect. 3 3
575 50.74 radiation 20.0 1440 < th dose independent rect. 3 3
585 50.74 temperature 10.0 1440 > th dose independent rect. 6 21
605 50.75 temperature 10.0 30 > th dose independent rect. 5 21
622 50.77 radiation 1.0 10 < th dose dependent rect. 2 12
640 50.78 temperature 25.0 720 > th dose independent rect. 4 5
651 50.79 precipitation 0.1 30 < th dose independent rect. 5 21
652 50.79 precipitation 0.1 30 < th dose dependent rect. 5 21
655 50.80 atmosphere 1000.0 10 > th dose independent rect. 2 12
673 50.83 wind 1.0 720 > th dose independent rect. 15 8
675 50.83 radiation 1.0 10 < th dose dependent rect. 2 10
680 50.84 temperature 10.0 10 > th dose independent rect. 2 12
682 50.84 temperature 10.0 10 > th dose independent rect. 14 12
684 50.84 atmosphere 1015.0 10 < th dose independent rect. 2 12
696 50.85 precipitation 0.1 10 < th dose independent rect. 2 12
704 50.85 precipitation 0.1 10 < th dose dependent rect. 2 12
706 50.86 wind 9.0 720 < th dose dependent rect. 2 1
749 50.91 radiation 1.0 10 < th dose independent rect. 2 12
760 50.93 atmosphere 995.0 720 > th dose independent rect. 14 1
764 50.93 humidity 60.0 10 > th dose independent rect. 14 12
767 50.93 precipitation 0.1 10 < th dose independent rect. 14 12
768 50.93 precipitation 0.1 10 < th dose dependent rect. 14 12
773 50.94 atmosphere 995.0 720 > th dose independent rect. 3 23
784 50.96 temperature 10.0 30 > th dose dependent rect. 5 21
799 50.97 radiation 1.0 10 < th dose independent rect. 2 10
812 50.97 radiation 1.0 90 < th dose dependent rect. 1 22
814 50.98 temperature 10.0 720 > th dose independent rect. 14 1
815 50.98 atmosphere 1015.0 720 < th dose independent rect. 14 1
819 50.98 temperature 10.0 720 > th dose independent rect. 15 23
820 50.98 atmosphere 995.0 720 > th dose independent rect. 15 23
826 50.99 temperature 10.0 1440 > th dose independent rect. 3 12
829 50.99 temperature 10.0 1440 > th dose independent rect. 15 12
832 50.99 wind 1.0 10 < th dose independent rect. 6 21
833 50.99 humidity 50.0 30 > th dose independent rect. 5 21
835 51.00 precipitation 0.1 720 < th dose independent rect. 14 1
840 51.00 humidity 50.0 720 > th dose independent rect. 23 16
841 51.00 precipitation 0.1 720 < th dose dependent rect. 14 1
857 51.02 precipitation 0.1 720 < th dose independent rect. 2 1
860 51.02 precipitation 0.1 720 < th dose dependent rect. 2 1
862 51.03 wind 1.0 720 > th dose independent rect. 14 1
875 51.05 temperature 30.0 10 < th dose independent rect. 2 12
894 51.08 humidity 50.0 10 > th dose dependent rect. 2 3
895 51.08 wind 9.0 30 < th dose dependent rect. 3 23
908 51.10 humidity 50.0 10 > th dose dependent rect. 14 12
917 51.12 wind 9.0 720 < th dose independent rect. 14 1
919 51.12 wind 9.0 10 < th dose independent rect. 2 12
920 51.12 temperature 30.0 10 < th dose independent rect. 14 12
949 51.15 radiation 10.0 10 < th dose independent rect. 14 12
961 51.15 radiation 40.0 10 < th dose dependent rect. 14 12
996 51.21 humidity 50.0 30 > th dose independent rect. 2 12