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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0524400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF231, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.039) R2 : 0.456
β1 : -0.835 (0.165) R2dD : 0.0438 R2D : 0.0894
β2 : 0.976 (0.0967) R2dC : 0.122 R2C : 0.0756
β3 : -1.72 (0.177) R2dE : 0.169 R2E : 0.258
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.49 (0.0893) R2dN8 : 0.0579 R2N8 : 0.0722
σ : 0.713
deviance : 234.17
__
_____
C
peak time of C : 3.71
E
wheather : temperature
threshold : 19.17
memory length : 2711
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.8 0.697 10.1 -0.525 0.933 -1.1 2.03 2.2 -0.401 4.4 19.7 2855 -- --
225.01 0.699 10.2 -0.825 0.962 -1.64 1.95 -- -0.466 4.5 19.5 2774 -- --
228.84 0.705 10.1 -0.523 0.963 -1.15 -- 2.28 -0.408 3.74 19.68 2733 -- --
234.17 0.713 10.2 -0.835 0.976 -1.72 -- -- -0.49 3.71 19.17 2711 -- --
278.88 0.778 10.1 -0.508 -- -1.01 -- 2.44 -0.399 -- 19.69 2887 -- --
268.81 0.769 10.3 -1.65 0.875 -- 2.43 -- -0.831 4.6 -- -- -- --
282.34 0.787 10.3 -1.67 0.897 -- -- -- -0.844 3.8 -- -- -- --
284.65 0.786 10.2 -0.803 -- -1.65 -- -- -0.475 -- 19.18 2937 -- --
248.9 0.735 10.2 -- 0.9 -1.96 -- -- -0.298 3.7 19.1 2818 -- --
326.72 0.845 10.3 -1.64 -- -- -- -- -0.82 -- -- -- -- --
356.05 0.883 10.3 -- 0.865 -- -- -- -0.658 3.82 -- -- -- --
296.61 0.802 10.2 -- -- -2.13 -- -- -0.313 -- 19.11 3008 -- --
397.24 0.93 10.3 -- -- -- -- -- -0.639 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.26 precipitation 0.1 270 > th dose independent rect. 2 2
2 203.31 precipitation 0.1 270 > th dose dependent rect. 2 2
3 204.90 radiation 20.0 1440 < th dose independent rect. 11 2
5 207.91 wind 1.0 1440 > th dose independent rect. 23 1
6 208.18 radiation 1.0 1440 < th dose independent rect. 11 1
7 208.18 radiation 1.0 1440 < th dose dependent rect. 11 1
11 211.87 humidity 50.0 43200 < th dose dependent rect. 7 2
14 212.77 radiation 20.0 4320 < th dose independent rect. 17 1
18 213.52 radiation 30.0 1440 < th dose dependent rect. 11 2
21 214.01 humidity 50.0 43200 < th dose dependent rect. 21 12
24 214.33 humidity 50.0 43200 < th dose independent rect. 3 6
32 214.45 humidity 50.0 43200 < th dose independent rect. 6 2
39 214.57 temperature 20.0 4320 < th dose independent rect. 18 1
42 214.84 wind 1.0 720 < th dose independent rect. 23 2
46 215.39 humidity 50.0 43200 > th dose independent rect. 6 2
49 215.65 radiation 20.0 4320 < th dose independent rect. 17 12
50 215.69 humidity 50.0 43200 < th dose independent rect. 19 14
55 216.12 radiation 20.0 4320 < th dose independent rect. 17 10
56 216.19 temperature 20.0 4320 > th dose independent rect. 17 5
59 216.41 temperature 20.0 4320 > th dose independent rect. 17 2
63 216.49 temperature 20.0 4320 < th dose dependent rect. 18 1
70 216.73 humidity 50.0 43200 > th dose independent rect. 2 7
72 216.74 temperature 20.0 4320 < th dose independent rect. 17 5
73 216.74 humidity 50.0 43200 > th dose independent rect. 21 11
82 216.95 precipitation 0.1 270 > th dose independent rect. 24 4
91 217.12 atmosphere 1005.0 720 > th dose independent rect. 20 4
96 217.26 precipitation 0.1 270 > th dose dependent rect. 24 4
147 218.55 temperature 20.0 4320 < th dose independent rect. 22 1
151 218.63 temperature 20.0 4320 > th dose independent rect. 22 1
157 218.69 humidity 50.0 43200 > th dose independent rect. 19 14
163 218.77 humidity 70.0 43200 < th dose independent rect. 24 3
175 219.00 humidity 70.0 43200 > th dose independent rect. 24 3
181 219.05 humidity 70.0 43200 < th dose dependent rect. 24 2
202 219.44 humidity 70.0 43200 > th dose independent rect. 23 6
204 219.53 humidity 70.0 43200 < th dose independent rect. 23 6
208 219.56 temperature 20.0 1440 < th dose independent rect. 5 1
250 220.23 humidity 70.0 43200 < th dose dependent rect. 22 7
259 220.33 temperature 10.0 43200 < th dose dependent rect. 2 1
280 220.58 radiation 20.0 1440 > th dose independent rect. 12 1
306 220.91 temperature 20.0 1440 > th dose independent rect. 5 2
310 220.98 wind 3.0 43200 > th dose independent rect. 8 1
321 221.07 temperature 10.0 43200 < th dose dependent rect. 2 3
326 221.11 temperature 20.0 4320 > th dose independent sin 17 NA
339 221.32 wind 3.0 43200 < th dose independent rect. 8 1
350 221.46 temperature 20.0 4320 < th dose independent sin 16 NA
403 222.01 temperature 20.0 1440 > th dose independent rect. 22 9
404 222.02 temperature 20.0 1440 < th dose independent rect. 22 9
409 222.08 radiation 40.0 4320 < th dose independent rect. 15 17
420 222.20 temperature 10.0 43200 > th dose independent rect. 4 1
428 222.27 temperature 20.0 1440 < th dose independent rect. 1 6
437 222.35 radiation 1.0 1440 > th dose dependent rect. 12 1
440 222.36 temperature 10.0 43200 < th dose independent rect. 4 1
445 222.42 temperature 10.0 43200 < th dose dependent rect. 2 19
449 222.45 temperature 20.0 1440 > th dose independent rect. 1 6
451 222.47 temperature 10.0 43200 < th dose dependent rect. 2 8
467 222.55 atmosphere 1005.0 720 < th dose independent rect. 20 5
484 222.69 temperature 20.0 720 > th dose independent rect. 20 10
532 223.04 temperature 20.0 1440 > th dose independent rect. 22 6
558 223.29 temperature 20.0 270 < th dose independent rect. 21 11
564 223.33 wind 5.0 43200 < th dose dependent rect. 8 1
593 223.45 temperature 20.0 270 > th dose independent sin 9 NA
614 223.57 wind 3.0 43200 > th dose dependent rect. 8 1
686 223.99 temperature 10.0 43200 < th dose independent rect. 8 21
708 224.11 temperature 20.0 270 < th dose independent rect. 16 16
713 224.14 temperature 10.0 43200 < th dose independent rect. 20 9
716 224.15 temperature 10.0 43200 < th dose independent rect. 23 6
741 224.27 temperature 10.0 43200 < th dose dependent sin 2 NA
744 224.28 wind 1.0 43200 > th dose independent rect. 13 13
747 224.29 temperature 10.0 43200 > th dose independent rect. 23 6
760 224.34 temperature 20.0 720 > th dose independent rect. 18 14
764 224.36 temperature 10.0 43200 < th dose independent rect. 2 20
781 224.43 wind 1.0 14400 > th dose independent rect. 23 3
790 224.50 temperature 20.0 1440 > th dose independent rect. 3 1
794 224.51 radiation 10.0 4320 > th dose dependent rect. 17 14
808 224.58 temperature 20.0 4320 < th dose dependent rect. 20 2
815 224.61 temperature 10.0 43200 > th dose independent rect. 2 17
828 224.63 radiation 40.0 4320 < th dose independent rect. 15 6
829 224.63 temperature 10.0 43200 > th dose independent rect. 2 15
845 224.69 humidity 70.0 43200 > th dose dependent rect. 20 2
852 224.71 temperature 10.0 43200 > th dose independent rect. 2 9
861 224.74 temperature 10.0 43200 > th dose independent rect. 13 16
862 224.75 temperature 20.0 1440 < th dose independent rect. 3 1
866 224.76 temperature 10.0 43200 < th dose independent rect. 2 8
919 224.86 temperature 20.0 270 > th dose independent rect. 20 19
920 224.86 temperature 10.0 43200 > th dose independent rect. 9 20
938 224.91 wind 1.0 43200 < th dose independent rect. 13 13
939 224.91 wind 1.0 43200 < th dose dependent rect. 6 20
952 224.97 radiation 10.0 4320 > th dose dependent rect. 17 1
999 225.03 temperature 10.0 43200 > th dose independent rect. 2 20