Os06g0522500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os06g0522500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.72 | 0.61 | 5.49 | 0.72 | 0.602 | 1.4 | 0.0777 | -0.14 | -0.0185 | 14.7 | 25.35 | 331 | -- | -- |
| 168.74 | 0.605 | 5.5 | 0.696 | 0.603 | 1.41 | 0.101 | -- | -0.0221 | 14.7 | 25.35 | 330 | -- | -- |
| 168.73 | 0.605 | 5.49 | 0.731 | 0.616 | 1.39 | -- | -0.2 | -0.0121 | 14.7 | 25.5 | 320 | -- | -- |
| 168.78 | 0.605 | 5.5 | 0.699 | 0.603 | 1.41 | -- | -- | -0.0232 | 14.7 | 25.34 | 330 | -- | -- |
| 174.93 | 0.616 | 5.5 | 0.691 | -- | 1.5 | -- | 0.37 | -0.00779 | -- | 25.8 | 998 | -- | -- |
| 197.57 | 0.659 | 5.56 | 0.33 | 0.447 | -- | 0.132 | -- | -0.316 | 13.6 | -- | -- | -- | -- |
| 197.64 | 0.658 | 5.56 | 0.334 | 0.447 | -- | -- | -- | -0.316 | 13.7 | -- | -- | -- | -- |
| 175.11 | 0.616 | 5.49 | 0.756 | -- | 1.48 | -- | -- | 0.00504 | -- | 25.9 | 990 | -- | -- |
| 180.25 | 0.625 | 5.52 | -- | 0.538 | 1.12 | -- | -- | -0.149 | 14.6 | 25.3 | 360 | -- | -- |
| 209.83 | 0.677 | 5.56 | 0.316 | -- | -- | -- | -- | -0.326 | -- | -- | -- | -- | -- |
| 200.59 | 0.663 | 5.57 | -- | 0.441 | -- | -- | -- | -0.353 | 13.6 | -- | -- | -- | -- |
| 188.19 | 0.639 | 5.52 | -- | -- | 1.15 | -- | -- | -0.142 | -- | 25.8 | 950 | -- | -- |
| 212.47 | 0.68 | 5.57 | -- | -- | -- | -- | -- | -0.361 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.72 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 3 | 163.95 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 23 | 165.10 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 117 | 166.26 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 175 | 166.70 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 197 | 166.87 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 207 | 166.91 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 219 | 166.98 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 220 | 166.98 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 223 | 166.99 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 227 | 167.00 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 236 | 167.01 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 238 | 167.02 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 288 | 167.17 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 292 | 167.18 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 305 | 167.21 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 329 | 167.29 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 333 | 167.33 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 374 | 167.42 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 428 | 167.56 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 505 | 167.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 623 | 167.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 686 | 168.12 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 687 | 168.12 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 773 | 168.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 793 | 168.36 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 887 | 168.49 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 888 | 168.49 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 945 | 168.58 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 969 | 168.61 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 12 |