Os06g0522300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0522300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Haem peroxidase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 311.53 | 0.829 | 3.03 | -0.945 | 0.212 | 1.3 | -0.628 | -7.68 | -0.184 | 0.747 | 20 | 22 | 1.05 | 2.97 |
| 381.22 | 0.916 | 3.02 | -0.746 | 0.223 | 1.23 | -2.33 | -- | -0.18 | 2.82 | 19.98 | 14 | 1.09 | 2.93 |
| 312.97 | 0.824 | 3.03 | -0.924 | 0.21 | 1.32 | -- | -8.01 | -0.182 | 0.377 | 20 | 18 | 1.05 | 2.97 |
| 395.92 | 0.927 | 3.03 | -0.692 | 0.224 | 1.27 | -- | -- | -0.18 | 0.128 | 19.93 | 12 | 1.07 | 2.96 |
| 315.55 | 0.827 | 3.03 | -0.957 | -- | 1.39 | -- | -8.05 | -0.183 | -- | 20.03 | 18 | 1.02 | 3 |
| 423.22 | 0.964 | 3.03 | -0.736 | 0.597 | -- | -2.25 | -- | -0.19 | 2.71 | -- | -- | -- | -- |
| 440.67 | 0.983 | 3.02 | -0.681 | 0.587 | -- | -- | -- | -0.176 | 2.29 | -- | -- | -- | -- |
| 398.54 | 0.93 | 3.01 | -0.672 | -- | 1.37 | -- | -- | -0.155 | -- | 19.9 | 12 | 1.07 | 2.96 |
| 408.09 | 0.941 | 3.02 | -- | 0.213 | 1.24 | -- | -- | -0.108 | 0.353 | 19.98 | 12 | 1.06 | 2.95 |
| 461.16 | 1 | 3.02 | -0.656 | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
| 452.88 | 0.995 | 3 | -- | 0.574 | -- | -- | -- | -0.1 | 2.26 | -- | -- | -- | -- |
| 410.45 | 0.944 | 3 | -- | -- | 1.36 | -- | -- | -0.0808 | -- | 19.99 | 12 | 1.06 | 2.96 |
| 472.51 | 1.01 | 3 | -- | -- | -- | -- | -- | -0.0887 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 313.87 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 3 |
| 4 | 325.44 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 6 | 327.49 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 14 | 334.06 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 17 | 334.70 | wind | 1.0 | 90 | < th | dose independent | rect. | 23 | 5 |
| 26 | 339.35 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 42 | 341.93 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 16 |
| 57 | 344.73 | wind | 1.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 64 | 346.06 | wind | 1.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 84 | 348.20 | wind | 1.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 104 | 350.55 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 1 | 3 |
| 114 | 351.95 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 1 | 3 |
| 121 | 352.73 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 180 | 357.32 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 194 | 358.00 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 3 |
| 211 | 358.00 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 245 | 358.19 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 252 | 358.61 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 255 | 358.71 | humidity | 90.0 | 30 | > th | dose independent | rect. | 24 | 4 |
| 258 | 358.85 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 259 | 358.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 265 | 359.11 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 19 | 5 |
| 279 | 359.53 | temperature | 20.0 | 90 | > th | dose independent | sin | 10 | NA |
| 280 | 359.54 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 281 | 359.54 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 289 | 359.80 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 309 | 360.26 | temperature | 20.0 | 90 | < th | dose independent | sin | 11 | NA |
| 310 | 360.27 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 1 | 3 |
| 317 | 360.70 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 327 | 360.95 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 358 | 361.56 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 365 | 361.63 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 371 | 361.86 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 376 | 361.97 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 378 | 362.03 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 379 | 362.03 | wind | 1.0 | 10 | < th | dose dependent | rect. | 23 | 5 |
| 392 | 362.40 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 3 |
| 397 | 362.57 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 399 | 362.61 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 440 | 363.50 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 448 | 363.56 | temperature | 20.0 | 90 | < th | dose independent | rect. | 19 | 14 |
| 451 | 363.63 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 12 |
| 453 | 363.70 | temperature | 20.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 456 | 363.74 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 458 | 363.79 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 465 | 364.01 | temperature | 20.0 | 90 | < th | dose independent | rect. | 19 | 12 |
| 467 | 364.04 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 470 | 364.12 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 10 |
| 494 | 364.47 | wind | 1.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 498 | 364.59 | wind | 1.0 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 529 | 364.95 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 547 | 365.22 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 5 |
| 558 | 365.44 | wind | 1.0 | 90 | > th | dose independent | sin | 16 | NA |
| 577 | 365.72 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 588 | 365.97 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 622 | 366.54 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 635 | 366.67 | wind | 1.0 | 90 | < th | dose independent | sin | 16 | NA |
| 639 | 366.71 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 783 | 368.61 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 793 | 368.69 | wind | 5.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 837 | 369.07 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 10 |
| 847 | 369.15 | wind | 5.0 | 720 | > th | dose independent | rect. | 15 | 11 |
| 880 | 369.43 | wind | 5.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 944 | 369.97 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 20 | 8 |
| 999 | 370.40 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 21 | 6 |