Os06g0521600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, SWIM-type domain containing protein.
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Os06g0521600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, SWIM-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.04 | 0.305 | 11.3 | -0.584 | 0.882 | -1.02 | 0.506 | -0.869 | 0.298 | 23.1 | 23.13 | 78 | -- | -- |
| 42.79 | 0.307 | 11.3 | -0.67 | 0.887 | -0.879 | 0.283 | -- | 0.286 | 23 | 23 | 83 | -- | -- |
| 42.74 | 0.307 | 11.3 | -0.63 | 0.893 | -0.96 | -- | -0.509 | 0.295 | 23 | 22.9 | 66 | -- | -- |
| 43.12 | 0.308 | 11.3 | -0.68 | 0.885 | -0.886 | -- | -- | 0.287 | 23 | 22.9 | 66 | -- | -- |
| 70.61 | 0.391 | 11.3 | -0.642 | -- | -1.06 | -- | -0.715 | 0.23 | -- | 29.7 | 812 | -- | -- |
| 52.33 | 0.339 | 11.3 | -0.492 | 0.773 | -- | 0.28 | -- | 0.401 | 22.7 | -- | -- | -- | -- |
| 52.65 | 0.34 | 11.3 | -0.503 | 0.772 | -- | -- | -- | 0.4 | 22.7 | -- | -- | -- | -- |
| 71.11 | 0.393 | 11.3 | -0.777 | -- | -1.06 | -- | -- | 0.214 | -- | 31.15 | 794 | -- | -- |
| 54.32 | 0.345 | 11.3 | -- | 0.844 | -0.62 | -- | -- | 0.392 | 22.8 | 22.8 | 45 | -- | -- |
| 89.42 | 0.442 | 11.3 | -0.488 | -- | -- | -- | -- | 0.404 | -- | -- | -- | -- | -- |
| 59.31 | 0.36 | 11.3 | -- | 0.769 | -- | -- | -- | 0.456 | 22.6 | -- | -- | -- | -- |
| 85.2 | 0.43 | 11.3 | -- | -- | -0.774 | -- | -- | 0.362 | -- | 35.31 | 769 | -- | -- |
| 95.71 | 0.457 | 11.3 | -- | -- | -- | -- | -- | 0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.10 | temperature | 15 | 90 | > th | dose dependent | sin | 11 | NA |
| 2 | 41.11 | temperature | 20 | 90 | > th | dose independent | sin | 11 | NA |
| 3 | 41.21 | temperature | 20 | 10 | > th | dose independent | sin | 10 | NA |
| 4 | 41.22 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 9 |
| 5 | 41.22 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 11 |
| 8 | 41.33 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 10 |
| 9 | 41.35 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 49 | 41.67 | temperature | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 70 | 41.78 | temperature | 25 | 90 | < th | dose dependent | sin | 11 | NA |
| 75 | 41.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 80 | 41.87 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 16 |
| 120 | 42.13 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 13 |
| 142 | 42.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 193 | 42.40 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 14 |
| 196 | 42.41 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 12 |
| 199 | 42.41 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 220 | 42.46 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 225 | 42.48 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 16 |
| 329 | 42.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 396 | 42.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 576 | 43.10 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 19 |
| 754 | 43.37 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 12 |
| 798 | 43.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 808 | 43.46 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 959 | 43.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 960 | 43.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 12 |
| 978 | 43.65 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 991 | 43.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |