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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0521500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0797) R2 : 0.512
β1 : -1.16 (0.288) R2dD : 0.0233 R2D : 0.0351
β2 : 1.52 (0.172) R2dC : 0.0844 R2C : 0.0922
β3 : 1.49 (0.465) R2dE : 0.0425 R2E : 0.19
β4 : -3.55 (0.715) R2dD*C : 0.027 R2D*C : 0.0277
β5 : -11.1 (1.82) R2dD*E : 0.155 R2D*E : 0.309
γ1 : -0.0743 (0.154) R2dN8 : 0.000366 R2N8 : -0.0107
σ : 1.3
deviance : 767.2
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_____
C
peak time of C : 2.99
E
wheather : wind
threshold : 6.456
memory length : 2893
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 1.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
767.2 1.3 3.4 -1.16 1.52 1.49 -3.55 -11.1 -0.0743 2.99 6.456 2893 17.2 1.4
809.52 1.33 3.61 -0.583 1.59 3.81 -3.74 -- -0.108 3.34 6.437 2386 17.3 1.62
799.39 1.32 3.42 -0.993 1.43 1.55 -- -11.6 -0.0273 2.9 6.364 2404 17.1 1.63
843.48 1.35 3.65 -0.427 1.44 4.36 -- -- -0.151 2.96 6.502 2282 17.1 2.05
899.96 1.4 3.41 -0.866 -- 2.15 -- -11.5 -0.0756 -- 5.761 2394 17.2 1.08
1189.16 1.62 3.79 -2.18 1.77 -- -4.88 -- -0.79 2.78 -- -- -- --
1270.66 1.67 3.78 -2.06 1.74 -- -- -- -0.76 2.56 -- -- -- --
949.92 1.44 3.61 -0.376 -- 4.66 -- -- -0.045 -- 6.387 2289 17.2 2.11
845.4 1.35 3.64 -- 1.36 4.57 -- -- -0.0907 3.12 6.381 2291 17.1 2.18
1448.78 1.78 3.77 -1.99 -- -- -- -- -0.717 -- -- -- -- --
1382.54 1.74 3.72 -- 1.7 -- -- -- -0.531 2.54 -- -- -- --
947.23 1.43 3.61 -- -- 5.04 -- -- 0.0251 -- 6.2 2282 17.2 2.33
1552.84 1.84 3.72 -- -- -- -- -- -0.496 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 798.01 wind 7.0 4320 > th dose independent rect. 17 3
4 805.49 wind 7.0 4320 < th dose independent rect. 17 3
6 809.31 wind 7.0 4320 > th dose dependent rect. 17 1
9 810.50 wind 7.0 4320 < th dose independent rect. 18 1
23 820.28 wind 7.0 4320 > th dose independent rect. 15 7
33 825.45 wind 7.0 4320 < th dose independent rect. 15 7
47 833.11 wind 7.0 4320 < th dose independent rect. 15 10
239 871.58 wind 7.0 4320 > th dose independent sin 14 NA
257 875.31 wind 7.0 4320 < th dose independent sin 14 NA
380 893.82 wind 7.0 4320 > th dose dependent sin 14 NA
391 894.89 wind 5.0 720 > th dose independent rect. 21 1
442 902.02 precipitation 0.1 270 > th dose dependent rect. 2 2
443 902.04 precipitation 0.1 270 > th dose independent rect. 2 2
469 907.68 wind 3.0 4320 > th dose dependent rect. 24 1
495 910.05 wind 5.0 4320 < th dose independent rect. 21 1
518 911.80 radiation 1.0 1440 < th dose independent rect. 13 2
519 911.80 radiation 1.0 1440 < th dose dependent rect. 13 2
523 912.77 wind 5.0 4320 < th dose independent rect. 24 1
538 914.83 humidity 80.0 4320 < th dose independent rect. 22 1
557 916.58 wind 5.0 4320 > th dose independent rect. 21 1
575 919.29 radiation 1.0 1440 > th dose independent rect. 10 5
578 919.53 wind 5.0 4320 > th dose independent rect. 24 1
580 919.71 radiation 1.0 1440 > th dose independent rect. 13 2
603 922.62 radiation 20.0 1440 < th dose independent rect. 11 2
666 928.64 radiation 20.0 1440 < th dose dependent rect. 11 1
677 930.05 humidity 80.0 4320 > th dose independent rect. 22 1
743 935.96 wind 9.0 43200 > th dose dependent rect. 14 3
780 939.41 wind 9.0 43200 < th dose independent rect. 12 1
786 939.72 wind 3.0 720 > th dose dependent rect. 21 1
823 941.85 wind 7.0 720 > th dose independent rect. 16 13
839 943.11 wind 5.0 720 > th dose dependent rect. 17 11
859 944.26 atmosphere 1005.0 720 < th dose independent rect. 19 3
866 944.96 wind 7.0 720 < th dose independent rect. 17 8
869 945.09 wind 5.0 720 > th dose dependent rect. 16 14
897 946.05 atmosphere 1005.0 720 < th dose independent rect. 21 1
901 946.31 wind 7.0 720 < th dose independent rect. 17 16
911 947.00 wind 9.0 43200 > th dose independent rect. 16 1
919 947.52 wind 9.0 43200 < th dose independent rect. 16 1
939 949.05 wind 9.0 43200 > th dose independent rect. 12 1
950 949.84 wind 9.0 43200 > th dose independent rect. 14 4
972 952.24 wind 9.0 43200 > th dose dependent rect. 15 1
985 953.65 wind 7.0 720 > th dose independent rect. 17 7
995 954.42 radiation 20.0 1440 < th dose independent rect. 11 5