Os06g0521400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase family protein.
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Os06g0521400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 383.93 | 0.921 | 3.66 | 0.73 | 0.0153 | -1.11 | 1.91 | -0.249 | -0.195 | 8.24 | 21.27 | 661 | -- | -- |
| 384.09 | 0.913 | 3.65 | 0.79 | 0.0165 | -1.1 | 2.01 | -- | -0.182 | 8.23 | 21.23 | 662 | -- | -- |
| 393 | 0.923 | 3.71 | 0.539 | 0.151 | -1.13 | -- | -0.971 | -0.307 | 13.4 | 21.3 | 624 | -- | -- |
| 395.64 | 0.926 | 3.65 | 0.835 | 0.124 | -1.06 | -- | -- | -0.201 | 12.8 | 21.21 | 653 | -- | -- |
| 393.43 | 0.924 | 3.68 | 0.599 | -- | -1.15 | -- | -0.989 | -0.237 | -- | 21.27 | 660 | -- | -- |
| 426.6 | 0.968 | 3.71 | 0.394 | 0.228 | -- | 1.93 | -- | -0.479 | 8.48 | -- | -- | -- | -- |
| 437.21 | 0.979 | 3.71 | 0.461 | 0.258 | -- | -- | -- | -0.476 | 10.9 | -- | -- | -- | -- |
| 396.52 | 0.927 | 3.65 | 0.851 | -- | -1.1 | -- | -- | -0.182 | -- | 21.27 | 664 | -- | -- |
| 412.84 | 0.946 | 3.68 | -- | 0.141 | -0.872 | -- | -- | -0.327 | 12.8 | 21.3 | 629 | -- | -- |
| 441.35 | 0.982 | 3.72 | 0.455 | -- | -- | -- | -- | -0.477 | -- | -- | -- | -- | -- |
| 442.8 | 0.984 | 3.72 | -- | 0.255 | -- | -- | -- | -0.527 | 10.8 | -- | -- | -- | -- |
| 413.98 | 0.948 | 3.68 | -- | -- | -0.899 | -- | -- | -0.322 | -- | 21.24 | 653 | -- | -- |
| 446.81 | 0.987 | 3.73 | -- | -- | -- | -- | -- | -0.528 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 384.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 4 | 385.64 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 8 | 385.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 13 |
| 10 | 385.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 20 |
| 23 | 386.35 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 25 | 386.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 34 | 386.73 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 41 | 386.93 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 46 | 387.36 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 51 | 387.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 65 | 387.94 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 20 |
| 69 | 388.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 74 | 388.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 79 | 388.37 | temperature | 25 | 30 | < th | dose dependent | rect. | 24 | 22 |
| 110 | 388.66 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 119 | 388.73 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 127 | 388.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 130 | 388.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 154 | 389.17 | temperature | 20 | 270 | > th | dose independent | sin | 6 | NA |
| 159 | 389.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 174 | 389.45 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 178 | 389.51 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 181 | 389.53 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 197 | 389.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 208 | 389.84 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 209 | 389.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 213 | 389.97 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 215 | 389.98 | temperature | 20 | 10 | < th | dose independent | sin | 0 | NA |
| 227 | 390.18 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 13 |
| 234 | 390.35 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 241 | 390.45 | temperature | 20 | 10 | < th | dose independent | rect. | 4 | 12 |
| 245 | 390.47 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 13 |
| 247 | 390.51 | temperature | 20 | 10 | > th | dose independent | sin | 1 | NA |
| 251 | 390.53 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 19 |
| 270 | 390.76 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 277 | 390.80 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 278 | 390.80 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 289 | 390.90 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 292 | 390.92 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 294 | 390.93 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 304 | 391.02 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 307 | 391.04 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 312 | 391.07 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 11 |
| 326 | 391.16 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 23 |
| 332 | 391.21 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 333 | 391.23 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 3 |
| 355 | 391.35 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 11 |
| 360 | 391.37 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 11 |
| 364 | 391.38 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 375 | 391.43 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 378 | 391.43 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 8 |
| 396 | 391.53 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 426 | 391.68 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 7 |
| 431 | 391.69 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 21 |
| 489 | 391.98 | temperature | 20 | 270 | < th | dose independent | sin | 4 | NA |
| 516 | 392.16 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 16 | 7 |
| 563 | 392.41 | temperature | 20 | 10 | < th | dose independent | rect. | 4 | 16 |
| 568 | 392.42 | temperature | 20 | 10 | < th | dose independent | rect. | 4 | 18 |
| 636 | 392.71 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 640 | 392.72 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 14 |
| 667 | 392.81 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 21 |
| 671 | 392.83 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 21 |
| 694 | 392.90 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 695 | 392.90 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 721 | 392.96 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 814 | 393.12 | atmosphere | 1005 | 43200 | < th | dose dependent | sin | 11 | NA |
| 828 | 393.15 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 934 | 393.34 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 953 | 393.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 1 |