Os06g0521200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase family protein.
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Os06g0521200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 222.02 | 0.7 | 3.76 | 0.0177 | 0.394 | 1.77 | 0.535 | 0.976 | -0.138 | 11.5 | 22.76 | 448 | -- | -- |
| 222.77 | 0.695 | 3.75 | 0.119 | 0.367 | 1.52 | 0.659 | -- | -0.107 | 11.1 | 23.2 | 498 | -- | -- |
| 223.08 | 0.696 | 3.77 | 0.0346 | 0.401 | 1.87 | -- | 1.19 | -0.141 | 12 | 22.58 | 441 | -- | -- |
| 224.34 | 0.698 | 3.75 | 0.148 | 0.387 | 1.55 | -- | -- | -0.105 | 11.9 | 23.2 | 464 | -- | -- |
| 230.1 | 0.706 | 3.77 | 0.064 | -- | 1.75 | -- | 0.922 | -0.106 | -- | 23.2 | 662 | -- | -- |
| 251.53 | 0.744 | 3.8 | -0.256 | 0.453 | -- | 0.719 | -- | -0.347 | 10.5 | -- | -- | -- | -- |
| 253.5 | 0.746 | 3.8 | -0.225 | 0.449 | -- | -- | -- | -0.344 | 10.9 | -- | -- | -- | -- |
| 231.14 | 0.708 | 3.75 | 0.182 | -- | 1.59 | -- | -- | -0.0775 | -- | 23.45 | 668 | -- | -- |
| 224.85 | 0.698 | 3.75 | -- | 0.39 | 1.47 | -- | -- | -0.129 | 11.9 | 23.22 | 463 | -- | -- |
| 266 | 0.762 | 3.81 | -0.235 | -- | -- | -- | -- | -0.347 | -- | -- | -- | -- | -- |
| 254.84 | 0.747 | 3.79 | -- | 0.451 | -- | -- | -- | -0.319 | 10.9 | -- | -- | -- | -- |
| 231.91 | 0.709 | 3.75 | -- | -- | 1.5 | -- | -- | -0.108 | -- | 23.48 | 665 | -- | -- |
| 267.46 | 0.763 | 3.8 | -- | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 220.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 7 | 221.58 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 18 | 222.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 22 | 222.58 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 24 | 222.75 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 25 | 222.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 30 | 222.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 97 | 223.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 110 | 223.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 179 | 224.49 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 205 | 224.67 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 229 | 224.84 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 11 |
| 236 | 224.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 22 |
| 243 | 224.93 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 258 | 225.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 272 | 225.08 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 276 | 225.10 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 288 | 225.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 290 | 225.13 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 295 | 225.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 304 | 225.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 310 | 225.24 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 312 | 225.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 326 | 225.31 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 335 | 225.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 402 | 225.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 16 | 21 |
| 403 | 225.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 406 | 225.81 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 407 | 225.82 | wind | 5 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 419 | 225.89 | temperature | 15 | 30 | > th | dose dependent | sin | 6 | NA |
| 427 | 225.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 18 | 19 |
| 536 | 226.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 567 | 226.47 | wind | 5 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 579 | 226.50 | radiation | 1 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 585 | 226.52 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 595 | 226.54 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 620 | 226.62 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 623 | 226.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 624 | 226.64 | radiation | 1 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 664 | 226.77 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 16 |
| 681 | 226.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 9 |
| 686 | 226.81 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 702 | 226.85 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 763 | 227.02 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 811 | 227.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 824 | 227.14 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 22 |
| 833 | 227.15 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 19 |
| 890 | 227.26 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 947 | 227.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |