Os06g0518300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0518300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 278.63 | 0.784 | 3.09 | 0.106 | 0.106 | 2 | 0.973 | -6.11 | -0.188 | 21.4 | 2.8 | 314 | 14.9 | 1.95 |
| 294.74 | 0.8 | 3.08 | 0.0401 | 0.0908 | 2.21 | 0.393 | -- | -0.192 | 21.5 | 2.389 | 315 | 14.7 | 2.15 |
| 281.38 | 0.781 | 3.09 | 0.0662 | 0.0875 | 2.07 | -- | -5.4 | -0.185 | 20.9 | 2.723 | 323 | 14.8 | 2.05 |
| 282.26 | 0.782 | 3.08 | 0.0791 | 0.104 | 2.34 | -- | -- | -0.19 | 20.6 | 2.304 | 316 | 14.6 | 0.75 |
| 281.85 | 0.782 | 3.09 | 0.0671 | -- | 2.09 | -- | -5.31 | -0.18 | -- | 2.7 | 323 | 14.8 | 2.09 |
| 315.89 | 0.833 | 3.1 | 0.0244 | 0.271 | -- | -0.0189 | -- | -0.256 | 19.2 | -- | -- | -- | -- |
| 315.89 | 0.832 | 3.1 | 0.0246 | 0.271 | -- | -- | -- | -0.256 | 19.2 | -- | -- | -- | -- |
| 282.23 | 0.782 | 3.08 | 0.0659 | -- | 2.67 | -- | -- | -0.185 | -- | 2.317 | 315 | 14.6 | 0.767 |
| 281.59 | 0.782 | 3.08 | -- | 0.0934 | 2.58 | -- | -- | -0.189 | 20.8 | 2.305 | 315 | 14.6 | 0.683 |
| 319.77 | 0.836 | 3.09 | 0.0197 | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
| 315.91 | 0.831 | 3.1 | -- | 0.27 | -- | -- | -- | -0.259 | 19.2 | -- | -- | -- | -- |
| 282.06 | 0.782 | 3.08 | -- | -- | 2.62 | -- | -- | -0.197 | -- | 2.303 | 315 | 14.6 | 0.696 |
| 319.78 | 0.835 | 3.09 | -- | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 287.43 | wind | 3.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 2 | 288.59 | radiation | 40.0 | 90 | > th | dose independent | rect. | 15 | 1 |
| 19 | 288.59 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 36 | 288.80 | wind | 5.0 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 45 | 290.94 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 47 | 291.33 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 50 | 291.33 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 59 | 291.92 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 64 | 292.15 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 18 | 2 |
| 101 | 294.13 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 18 | 13 |
| 105 | 294.25 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 18 | 10 |
| 109 | 294.42 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 18 | 8 |
| 185 | 296.14 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 12 | 8 |
| 191 | 296.39 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 20 | 9 |
| 222 | 296.92 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 20 | 15 |
| 227 | 296.96 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 281 | 297.56 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 20 | 15 |
| 322 | 297.92 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 9 | 5 |
| 325 | 297.97 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 367 | 298.42 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 10 | 3 |
| 398 | 298.83 | radiation | 40.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 427 | 298.96 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 9 | 2 |
| 501 | 299.46 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 10 | 1 |
| 530 | 299.70 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 542 | 299.83 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 567 | 300.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 568 | 300.17 | wind | 5.0 | 10 | < th | dose independent | rect. | 13 | 7 |
| 589 | 300.35 | humidity | 60.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 600 | 300.43 | wind | 3.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 614 | 300.50 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 8 | 6 |
| 705 | 300.90 | wind | 3.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 776 | 301.35 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 1 |
| 780 | 301.37 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 785 | 301.41 | wind | 7.0 | 30 | > th | dose independent | rect. | 20 | 12 |
| 789 | 301.44 | wind | 7.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 813 | 301.49 | wind | 7.0 | 30 | > th | dose dependent | rect. | 20 | 12 |
| 816 | 301.50 | wind | 7.0 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 817 | 301.50 | wind | 7.0 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 823 | 301.51 | wind | 7.0 | 30 | > th | dose dependent | rect. | 21 | 7 |
| 839 | 301.54 | humidity | 80.0 | 30 | < th | dose dependent | sin | 13 | NA |
| 841 | 301.55 | precipitation | 0.1 | 10 | > th | dose independent | sin | 12 | NA |
| 866 | 301.62 | radiation | 40.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 904 | 301.79 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 1 |
| 908 | 301.79 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 929 | 301.93 | wind | 7.0 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 931 | 301.94 | wind | 7.0 | 30 | > th | dose dependent | rect. | 18 | 11 |
| 939 | 301.97 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 13 | NA |
| 948 | 302.02 | wind | 7.0 | 30 | > th | dose dependent | rect. | 18 | 4 |
| 956 | 302.05 | wind | 5.0 | 720 | < th | dose independent | rect. | 24 | 8 |
| 963 | 302.07 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 21 | 1 |
| 974 | 302.07 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 21 | 1 |