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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0517700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thionin Osthi1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0192) R2 : 0.00224
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0408 (0.0404) R2dN8 : 0.00289 R2N8 : 0.00224
σ : 0.361
deviance : 59.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.28 0.356 2.87 -0.0381 0.092 -0.282 0.0174 0.303 0.0537 14 1.4 15 -- --
57.4 0.353 2.86 -0.0201 0.0901 -0.259 0.0582 -- 0.0574 13.8 1.388 14 -- --
57.28 0.352 2.87 -0.0378 0.0919 -0.282 -- 0.309 0.0537 14 1.392 14 -- --
57.38 0.353 2.86 -0.0268 0.097 -0.246 -- -- 0.0641 13.9 1.404 11 -- --
57.71 0.354 2.87 -0.0332 -- -0.238 -- 0.298 0.0491 -- 1.331 14 -- --
59.52 0.362 2.86 0.0316 0.0685 -- -0.00514 -- 0.0435 7.98 -- -- -- --
59.52 0.361 2.86 0.0315 0.0685 -- -- -- 0.0435 7.98 -- -- -- --
57.83 0.354 2.86 -0.0144 -- -0.217 -- -- 0.0529 -- 1.309 15 -- --
57.39 0.353 2.86 -- 0.0962 -0.241 -- -- 0.0667 13.8 1.423 11 -- --
59.78 0.361 2.86 0.0322 -- -- -- -- 0.0444 -- -- -- -- --
59.55 0.361 2.86 -- 0.0687 -- -- -- 0.04 7.94 -- -- -- --
57.84 0.354 2.86 -- -- -0.215 -- -- 0.0551 -- 1.354 14 -- --
59.81 0.361 2.87 -- -- -- -- -- 0.0408 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.11 radiation 10.0 1440 < th dose dependent rect. 21 1
4 54.17 temperature 25.0 30 > th dose independent rect. 20 1
6 54.20 temperature 10.0 1440 > th dose independent rect. 21 1
9 54.20 temperature 30.0 1440 < th dose independent rect. 21 1
13 54.20 humidity 50.0 1440 > th dose independent rect. 21 1
19 54.20 atmosphere 995.0 1440 > th dose independent rect. 21 1
20 54.20 radiation 1.0 1440 < th dose independent rect. 21 1
40 54.20 temperature 10.0 1440 > th dose independent rect. 22 23
43 54.25 temperature 20.0 30 > th dose dependent rect. 20 1
46 54.29 humidity 90.0 30 < th dose independent rect. 20 1
53 54.37 atmosphere 1005.0 30 > th dose dependent rect. 20 1
55 54.38 wind 3.0 30 > th dose independent rect. 20 1
57 54.43 humidity 90.0 30 < th dose dependent rect. 20 1
59 54.45 wind 1.0 30 > th dose dependent rect. 20 1
62 54.47 wind 5.0 30 < th dose independent rect. 20 1
65 54.48 atmosphere 1000.0 30 > th dose independent rect. 20 1
68 54.49 temperature 10.0 30 > th dose independent rect. 20 1
70 54.49 temperature 30.0 30 < th dose independent rect. 20 1
71 54.49 humidity 50.0 30 > th dose independent rect. 20 1
75 54.49 atmosphere 1010.0 30 < th dose independent rect. 20 1
77 54.49 radiation 1.0 30 < th dose independent rect. 20 1
82 54.49 precipitation 0.1 30 < th dose independent rect. 20 1
83 54.49 temperature 10.0 30 > th dose independent rect. 21 23
84 54.49 radiation 1.0 30 < th dose dependent rect. 20 1
89 54.49 precipitation 0.1 30 < th dose dependent rect. 20 1
93 54.56 wind 9.0 30 < th dose dependent rect. 20 1
94 54.57 humidity 50.0 30 > th dose dependent rect. 20 1
98 54.68 atmosphere 1015.0 30 < th dose dependent rect. 20 1
107 55.09 wind 9.0 30 < th dose independent rect. 21 23
112 55.23 wind 9.0 1440 < th dose independent rect. 21 1
113 55.23 temperature 30.0 30 < th dose dependent rect. 20 1
118 55.46 precipitation 0.1 270 > th dose independent rect. 8 1
119 55.46 precipitation 0.1 270 > th dose dependent rect. 8 1
152 55.82 wind 1.0 10 < th dose independent rect. 11 1
160 56.12 wind 1.0 90 < th dose dependent rect. 10 1
170 56.48 wind 1.0 90 < th dose independent rect. 10 1
171 56.56 humidity 80.0 10 > th dose independent rect. 12 1
176 56.75 precipitation 0.1 720 < th dose independent rect. 3 6
177 56.75 precipitation 0.1 720 < th dose dependent rect. 3 6
178 56.84 temperature 25.0 10 > th dose independent rect. 24 20
180 56.87 wind 3.0 10 < th dose dependent rect. 11 1
183 56.90 radiation 40.0 90 > th dose dependent rect. 8 1
206 56.98 radiation 40.0 90 > th dose independent rect. 8 1
226 57.03 temperature 25.0 10 > th dose independent rect. 24 11
227 57.11 temperature 25.0 10 < th dose independent rect. 2 10
228 57.11 humidity 70.0 720 > th dose independent rect. 19 14
229 57.11 humidity 90.0 270 > th dose dependent rect. 8 10
230 57.13 wind 1.0 10 > th dose independent rect. 21 23
231 57.14 humidity 90.0 270 > th dose dependent rect. 8 6
236 57.20 humidity 90.0 270 > th dose dependent rect. 8 2
238 57.21 humidity 90.0 270 > th dose dependent rect. 8 4
242 57.25 precipitation 0.1 720 < th dose independent rect. 21 18
244 57.25 precipitation 0.1 720 < th dose dependent rect. 21 18
271 57.32 temperature 25.0 10 > th dose independent rect. 3 17
278 57.34 wind 1.0 30 > th dose independent rect. 23 10
300 57.43 wind 1.0 10 > th dose independent rect. 23 21
301 57.43 wind 1.0 10 > th dose independent rect. 23 23
303 57.44 humidity 70.0 270 > th dose independent rect. 21 11
325 57.50 radiation 1.0 720 < th dose independent rect. 24 8
326 57.50 precipitation 0.1 720 < th dose independent rect. 21 12
328 57.50 precipitation 0.1 720 < th dose dependent rect. 21 12
335 57.52 humidity 70.0 720 > th dose independent rect. 3 6
344 57.54 precipitation 0.1 720 < th dose independent rect. 3 14
358 57.54 precipitation 0.1 720 < th dose dependent rect. 3 14
363 57.54 wind 5.0 10 < th dose dependent rect. 11 19
367 57.57 temperature 25.0 10 > th dose independent sin 4 NA
377 57.59 radiation 1.0 720 > th dose independent rect. 6 9
378 57.60 temperature 25.0 10 < th dose independent sin 4 NA
379 57.60 temperature 25.0 10 > th dose independent rect. 3 8
382 57.60 radiation 1.0 30 > th dose dependent rect. 9 1
416 57.66 wind 1.0 10 > th dose independent sin 0 NA
417 57.66 humidity 60.0 1440 > th dose independent rect. 6 3
418 57.66 humidity 90.0 10 < th dose independent rect. 24 9
420 57.66 wind 1.0 90 > th dose independent rect. 4 15
422 57.66 wind 5.0 10 < th dose dependent rect. 9 21
426 57.67 atmosphere 995.0 14400 > th dose independent rect. 6 6
427 57.67 temperature 25.0 10 < th dose independent rect. 24 12
432 57.67 wind 3.0 10 < th dose dependent rect. 2 11
442 57.69 radiation 40.0 720 < th dose independent rect. 3 6
444 57.69 humidity 60.0 1440 > th dose independent rect. 24 9
448 57.69 humidity 80.0 90 > th dose independent rect. 10 19
452 57.70 precipitation 0.1 720 < th dose independent rect. 21 10
453 57.70 wind 1.0 10 > th dose independent rect. 6 14
455 57.70 radiation 1.0 720 < th dose dependent rect. 24 8
456 57.70 precipitation 0.1 720 < th dose dependent rect. 21 10
460 57.71 radiation 1.0 720 > th dose independent rect. 4 5
471 57.71 humidity 70.0 720 < th dose independent rect. 19 14
483 57.72 humidity 80.0 90 > th dose independent rect. 10 3
492 57.72 temperature 10.0 10 > th dose dependent rect. 6 14
501 57.73 temperature 10.0 10 > th dose dependent rect. 20 10
507 57.74 wind 9.0 720 < th dose independent rect. 3 6
509 57.74 wind 9.0 720 < th dose independent rect. 15 6
510 57.74 temperature 10.0 720 > th dose independent rect. 3 6
512 57.74 atmosphere 995.0 720 > th dose independent rect. 3 6
513 57.74 atmosphere 1015.0 720 < th dose independent rect. 3 6
515 57.74 humidity 70.0 1440 > th dose independent rect. 21 10
519 57.74 temperature 10.0 720 > th dose independent rect. 9 18
542 57.76 radiation 30.0 270 < th dose independent rect. 21 11
552 57.77 temperature 10.0 720 > th dose independent rect. 15 6
554 57.77 temperature 10.0 720 > th dose independent rect. 21 18
580 57.78 humidity 50.0 720 > th dose dependent rect. 1 2
584 57.79 radiation 40.0 720 < th dose independent rect. 15 6
595 57.80 wind 9.0 720 < th dose dependent rect. 1 2
601 57.81 radiation 1.0 720 > th dose independent rect. 4 11
616 57.81 radiation 40.0 90 > th dose dependent sin 12 NA
623 57.82 humidity 70.0 720 > th dose independent rect. 19 6
631 57.82 wind 9.0 10 < th dose dependent rect. 2 11
634 57.83 radiation 20.0 90 > th dose independent rect. 9 1
635 57.83 temperature 10.0 1440 > th dose independent rect. 6 6
645 57.83 temperature 10.0 1440 > th dose independent rect. 12 18
651 57.84 atmosphere 1005.0 30 > th dose independent rect. 11 2
652 57.84 temperature 25.0 30 > th dose independent rect. 20 3
653 57.84 humidity 90.0 270 > th dose independent rect. 9 5
657 57.84 wind 9.0 270 < th dose independent rect. 8 13
663 57.85 wind 9.0 4320 < th dose independent rect. 3 1
664 57.85 temperature 25.0 10 < th dose independent rect. 4 8
667 57.85 wind 9.0 720 < th dose independent rect. 9 18
681 57.86 temperature 10.0 270 > th dose independent rect. 21 11
682 57.86 temperature 30.0 270 < th dose independent rect. 21 11
685 57.86 atmosphere 995.0 270 > th dose independent rect. 21 11
687 57.86 temperature 10.0 270 > th dose independent rect. 8 13
705 57.87 wind 1.0 720 > th dose independent rect. 15 6
709 57.87 radiation 40.0 90 < th dose independent rect. 23 10
710 57.87 wind 9.0 270 < th dose independent rect. 21 11
713 57.87 temperature 25.0 10 > th dose independent rect. 24 15
722 57.88 radiation 20.0 14400 < th dose independent rect. 21 9
729 57.88 radiation 1.0 14400 < th dose dependent rect. 3 1
738 57.89 temperature 10.0 1440 > th dose independent rect. 21 9
741 57.89 temperature 30.0 1440 < th dose independent rect. 21 9
745 57.89 humidity 50.0 1440 > th dose independent rect. 21 9
751 57.89 atmosphere 995.0 1440 > th dose independent rect. 21 9
752 57.89 radiation 20.0 1440 < th dose independent rect. 21 9
765 57.89 temperature 10.0 1440 > th dose independent rect. 6 15
775 57.90 temperature 25.0 270 < th dose independent rect. 9 1
782 57.90 wind 7.0 10 < th dose dependent rect. 20 17
789 57.91 wind 1.0 30 > th dose independent rect. 21 12
792 57.91 atmosphere 1005.0 10 > th dose dependent rect. 20 3
806 57.92 wind 1.0 30 > th dose independent rect. 13 22
816 57.92 wind 3.0 10 < th dose dependent rect. 2 16
820 57.93 temperature 10.0 1440 > th dose independent rect. 3 1
823 57.93 temperature 30.0 1440 < th dose independent rect. 3 1
827 57.93 humidity 50.0 1440 > th dose independent rect. 3 1
836 57.93 humidity 60.0 1440 < th dose independent rect. 8 1
837 57.93 atmosphere 995.0 1440 > th dose independent rect. 3 1
838 57.93 radiation 1.0 1440 < th dose independent rect. 3 1
874 57.93 precipitation 0.1 270 < th dose independent rect. 8 13
876 57.93 wind 9.0 720 < th dose independent rect. 21 18
877 57.93 temperature 10.0 1440 > th dose independent rect. 4 23
880 57.93 humidity 60.0 1440 < th dose dependent rect. 8 1
881 57.93 radiation 1.0 1440 < th dose dependent rect. 3 1
914 57.93 precipitation 0.1 270 < th dose dependent rect. 8 13
915 57.94 temperature 25.0 10 < th dose independent rect. 10 1
917 57.94 wind 1.0 270 > th dose independent rect. 4 3
932 57.94 wind 1.0 30 > th dose independent rect. 13 20
933 57.94 temperature 30.0 720 > th dose dependent rect. 18 1
956 57.95 wind 5.0 720 < th dose independent rect. 1 2
959 57.95 temperature 10.0 720 > th dose independent rect. 13 2
960 57.95 atmosphere 1015.0 720 < th dose independent rect. 13 2
961 57.95 precipitation 0.1 720 < th dose independent rect. 13 2
968 57.95 temperature 10.0 720 > th dose independent rect. 15 22
972 57.95 precipitation 0.1 720 < th dose dependent rect. 13 2