Os06g0516800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os06g0516800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.43 | 0.317 | 7.63 | 0.53 | 1.14 | 0.722 | -0.46 | -1.7 | -0.287 | 20.7 | 29.7 | 3954 | -- | -- |
| 45.54 | 0.314 | 7.66 | 0.199 | 1.13 | 0.536 | -0.465 | -- | -0.293 | 20.6 | 29.37 | 3935 | -- | -- |
| 46.12 | 0.316 | 7.63 | 0.515 | 1.14 | 0.707 | -- | -1.53 | -0.291 | 20.7 | 29.7 | 3949 | -- | -- |
| 46.17 | 0.316 | 7.66 | 0.231 | 1.14 | 0.541 | -- | -- | -0.295 | 20.7 | 29.4 | 3928 | -- | -- |
| 115.16 | 0.5 | 7.61 | 0.537 | -- | 0.573 | -- | -1.25 | -0.283 | -- | 29.9 | 5765 | -- | -- |
| 54.25 | 0.345 | 7.66 | 0.0731 | 1.11 | -- | -0.493 | -- | -0.295 | 20.5 | -- | -- | -- | -- |
| 55.03 | 0.347 | 7.66 | 0.0883 | 1.11 | -- | -- | -- | -0.295 | 20.5 | -- | -- | -- | -- |
| 115.51 | 0.501 | 7.61 | 0.268 | -- | 0.422 | -- | -- | -0.259 | -- | 29.89 | 7200 | -- | -- |
| 47.5 | 0.321 | 7.66 | -- | 1.14 | 0.496 | -- | -- | -0.307 | 20.7 | 29.39 | 3780 | -- | -- |
| 123.73 | 0.52 | 7.63 | 0.0839 | -- | -- | -- | -- | -0.305 | -- | -- | -- | -- | -- |
| 55.23 | 0.348 | 7.66 | -- | 1.11 | -- | -- | -- | -0.305 | 20.5 | -- | -- | -- | -- |
| 116.17 | 0.502 | 7.64 | -- | -- | 0.368 | -- | -- | -0.373 | -- | 30.1 | 5768 | -- | -- |
| 123.92 | 0.52 | 7.63 | -- | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.93 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 7 | 45.19 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 8 | 45.21 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 33 | 45.41 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 52 | 45.51 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 58 | 45.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 76 | 45.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 81 | 45.65 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 83 | 45.67 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 90 | 45.69 | temperature | 30.0 | 4320 | < th | dose independent | sin | 7 | NA |
| 91 | 45.69 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 93 | 45.69 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 94 | 45.69 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 100 | 45.70 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 107 | 45.71 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 111 | 45.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 126 | 45.74 | temperature | 30.0 | 4320 | > th | dose independent | sin | 7 | NA |
| 134 | 45.75 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 140 | 45.76 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 144 | 45.76 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 7 |
| 160 | 45.77 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 12 |
| 188 | 45.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 206 | 45.81 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 270 | 45.82 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 14 |
| 312 | 45.86 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 388 | 45.90 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 411 | 45.92 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 14 | NA |
| 418 | 45.92 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 20 |
| 550 | 46.02 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 606 | 46.06 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 623 | 46.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 630 | 46.08 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 642 | 46.09 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 652 | 46.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 653 | 46.10 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 661 | 46.10 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 17 |
| 686 | 46.10 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 713 | 46.11 | temperature | 30.0 | 4320 | < th | dose independent | no | NA | NA |
| 785 | 46.11 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 821 | 46.13 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 825 | 46.13 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 837 | 46.13 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 839 | 46.13 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 857 | 46.14 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 866 | 46.15 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 897 | 46.16 | temperature | 30.0 | 4320 | > th | dose independent | no | NA | NA |
| 899 | 46.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |