Os06g0514700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os06g0514700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.93 | 0.199 | 10.5 | -0.0537 | 0.235 | -1.11 | 0.435 | -0.888 | 0.205 | 3.36 | 25.4 | 1364 | -- | -- |
| 18.38 | 0.2 | 10.6 | -0.257 | 0.239 | -0.884 | 0.392 | -- | 0.172 | 4.58 | 26.09 | 2374 | -- | -- |
| 18.5 | 0.2 | 10.5 | -0.0396 | 0.235 | -1.11 | -- | -0.981 | 0.206 | 3.59 | 25.41 | 1325 | -- | -- |
| 18.89 | 0.202 | 10.6 | -0.274 | 0.216 | -0.911 | -- | -- | 0.151 | 4.26 | 26.31 | 2522 | -- | -- |
| 20.97 | 0.213 | 10.5 | -0.0385 | -- | -1.14 | -- | -0.992 | 0.198 | -- | 25.9 | 1181 | -- | -- |
| 33.43 | 0.271 | 10.5 | 0.0957 | 0.291 | -- | 0.466 | -- | 0.393 | 3.23 | -- | -- | -- | -- |
| 34.12 | 0.274 | 10.5 | 0.0865 | 0.294 | -- | -- | -- | 0.39 | 3.41 | -- | -- | -- | -- |
| 21.46 | 0.216 | 10.6 | -0.307 | -- | -0.971 | -- | -- | 0.141 | -- | 26.5 | 2594 | -- | -- |
| 20.54 | 0.211 | 10.5 | -- | 0.301 | -0.847 | -- | -- | 0.209 | 4.01 | 26.66 | 1907 | -- | -- |
| 38.99 | 0.292 | 10.5 | 0.0989 | -- | -- | -- | -- | 0.398 | -- | -- | -- | -- | -- |
| 34.32 | 0.274 | 10.5 | -- | 0.296 | -- | -- | -- | 0.38 | 3.41 | -- | -- | -- | -- |
| 23.4 | 0.225 | 10.5 | -- | -- | -0.815 | -- | -- | 0.209 | -- | 26.95 | 2569 | -- | -- |
| 39.25 | 0.292 | 10.5 | -- | -- | -- | -- | -- | 0.387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 10 | 16.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 11 | 16.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 21 | 16.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 23 | 16.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 97 | 17.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 179 | 17.21 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 518 | 17.64 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 878 | 18.02 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 995 | 18.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |