Os06g0514100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thionin Osthi1.
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Os06g0514100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thionin Osthi1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.84 | 0.544 | 3.05 | -0.422 | 0.231 | 2.14 | -0.437 | 3.83 | 0.0573 | 8.23 | 7.489 | 3 | -- | -- |
| 141.43 | 0.554 | 3.03 | -0.473 | 0.213 | 1.18 | -0.459 | -- | 0.05 | 7.86 | 7.891 | 3 | -- | -- |
| 134.41 | 0.54 | 3.05 | -0.436 | 0.23 | 2.12 | -- | 3.79 | 0.0561 | 8.52 | 7.492 | 3 | -- | -- |
| 141.87 | 0.555 | 3.03 | -0.485 | 0.226 | 1.15 | -- | -- | 0.0535 | 8.98 | 7.886 | 3 | -- | -- |
| 137.36 | 0.546 | 3.06 | -0.439 | -- | 2.08 | -- | 3.74 | 0.0545 | -- | 7.5 | 3 | -- | -- |
| 149.63 | 0.573 | 3.04 | -0.574 | 0.219 | -- | -0.234 | -- | 0.00965 | 9.84 | -- | -- | -- | -- |
| 149.82 | 0.573 | 3.04 | -0.583 | 0.22 | -- | -- | -- | 0.00961 | 10.1 | -- | -- | -- | -- |
| 144.81 | 0.56 | 3.03 | -0.486 | -- | 1.14 | -- | -- | 0.0544 | -- | 7.872 | 3 | -- | -- |
| 147.76 | 0.566 | 3.02 | -- | 0.232 | 1.36 | -- | -- | 0.111 | 9.14 | 7.824 | 8 | -- | -- |
| 152.74 | 0.577 | 3.04 | -0.586 | -- | -- | -- | -- | 0.00931 | -- | -- | -- | -- | -- |
| 158.77 | 0.589 | 3.02 | -- | 0.223 | -- | -- | -- | 0.0745 | 10.3 | -- | -- | -- | -- |
| 149.53 | 0.57 | 3.02 | -- | -- | 1.29 | -- | -- | 0.118 | -- | 7.803 | 15 | -- | -- |
| 161.79 | 0.594 | 3.03 | -- | -- | -- | -- | -- | 0.0743 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.82 | radiation | 30 | 10 | > th | dose independent | rect. | 15 | 1 |
| 17 | 129.47 | radiation | 30 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 51 | 131.75 | humidity | 60 | 90 | < th | dose dependent | rect. | 8 | 2 |
| 66 | 131.92 | humidity | 60 | 90 | < th | dose independent | rect. | 8 | 2 |
| 81 | 132.05 | wind | 7 | 30 | > th | dose independent | rect. | 15 | 1 |
| 83 | 132.29 | humidity | 60 | 1440 | < th | dose dependent | rect. | 19 | 15 |
| 88 | 132.61 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 90 | 132.92 | humidity | 60 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 98 | 133.48 | humidity | 60 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 112 | 133.60 | radiation | 40 | 30 | > th | dose dependent | sin | 12 | NA |
| 131 | 133.70 | humidity | 60 | 30 | < th | dose dependent | rect. | 17 | 17 |
| 135 | 133.72 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 7 |
| 234 | 133.89 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 236 | 133.89 | humidity | 60 | 30 | < th | dose independent | rect. | 17 | 18 |
| 237 | 133.89 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 365 | 134.10 | wind | 7 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 407 | 134.31 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 412 | 134.40 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 416 | 134.42 | humidity | 60 | 1440 | < th | dose independent | rect. | 19 | 15 |
| 418 | 134.45 | humidity | 60 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 487 | 134.71 | radiation | 40 | 30 | > th | dose dependent | rect. | 13 | 22 |
| 523 | 134.93 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 2 |
| 590 | 135.31 | humidity | 60 | 1440 | > th | dose independent | rect. | 19 | 15 |
| 733 | 136.36 | wind | 7 | 10 | > th | dose dependent | rect. | 15 | 2 |
| 758 | 136.61 | wind | 1 | 10 | < th | dose dependent | sin | 21 | NA |
| 784 | 136.77 | wind | 5 | 30 | > th | dose dependent | rect. | 12 | 4 |
| 791 | 136.94 | wind | 1 | 10 | < th | dose independent | sin | 20 | NA |
| 800 | 137.01 | wind | 7 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 872 | 137.46 | wind | 7 | 10 | > th | dose dependent | rect. | 15 | 7 |
| 893 | 137.49 | wind | 7 | 10 | > th | dose independent | rect. | 21 | 19 |
| 900 | 137.64 | radiation | 40 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 953 | 137.83 | radiation | 40 | 30 | > th | dose independent | sin | 12 | NA |
| 954 | 137.83 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 15 | 1 |
| 976 | 137.90 | wind | 1 | 10 | > th | dose independent | sin | 21 | NA |
| 977 | 137.90 | wind | 7 | 10 | > th | dose independent | rect. | 9 | 7 |
| 988 | 137.96 | radiation | 40 | 4320 | < th | dose independent | rect. | 9 | 1 |