Os06g0509100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os06g0509100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.06 | 0.336 | 8.01 | 0.319 | 0.618 | -1.86 | -0.222 | 2.83 | 0.349 | 20.3 | 20.98 | 646 | -- | -- |
| 53.34 | 0.34 | 8.07 | -0.179 | 0.576 | -2.22 | 0.372 | -- | 0.214 | 19.8 | 14.29 | 556 | -- | -- |
| 50.95 | 0.332 | 8.02 | 0.275 | 0.654 | -1.91 | -- | 2.7 | 0.345 | 19.4 | 20.75 | 536 | -- | -- |
| 53.68 | 0.341 | 8.08 | -0.199 | 0.566 | -2.19 | -- | -- | 0.207 | 19.8 | 14.12 | 548 | -- | -- |
| 52.55 | 0.338 | 8.01 | 0.402 | -- | -1.43 | -- | 2.21 | 0.348 | -- | 21.6 | 1700 | -- | -- |
| 109.78 | 0.491 | 8.14 | -0.711 | 0.108 | -- | -0.0247 | -- | -0.122 | 1.93 | -- | -- | -- | -- |
| 109.78 | 0.491 | 8.14 | -0.71 | 0.108 | -- | -- | -- | -0.122 | 1.92 | -- | -- | -- | -- |
| 57.39 | 0.353 | 8.06 | -0.132 | -- | -1.79 | -- | -- | 0.21 | -- | 8.399 | 1707 | -- | -- |
| 54.6 | 0.344 | 8.07 | -- | 0.59 | -2.28 | -- | -- | 0.241 | 19.8 | 14.07 | 559 | -- | -- |
| 110.49 | 0.491 | 8.13 | -0.705 | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
| 123.06 | 0.519 | 8.12 | -- | 0.0952 | -- | -- | -- | -0.0427 | 1.72 | -- | -- | -- | -- |
| 57.78 | 0.354 | 8.05 | -- | -- | -1.84 | -- | -- | 0.233 | -- | 9.053 | 1709 | -- | -- |
| 123.61 | 0.519 | 8.12 | -- | -- | -- | -- | -- | -0.041 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 2 | 48.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 5 | 50.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 28 | 51.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 29 | 51.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 38 | 51.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 46 | 51.26 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 61 | 51.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 73 | 51.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 83 | 51.59 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 91 | 51.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 94 | 51.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 102 | 51.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 103 | 51.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 116 | 51.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 19 |
| 138 | 51.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 142 | 51.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 146 | 51.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 546 | 52.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 13 |