Os06g0508800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0508800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.63 | 0.44 | 8.11 | 1.68 | 1.15 | -1.55 | -0.0317 | 2.83 | 0.269 | 18.4 | 12.92 | 476 | -- | -- |
| 92.15 | 0.447 | 8.17 | 1.23 | 1.15 | -1.5 | 0.589 | -- | 0.144 | 18.5 | 14.06 | 536 | -- | -- |
| 87.64 | 0.436 | 8.12 | 1.68 | 1.15 | -1.55 | -- | 2.81 | 0.268 | 18.4 | 12.97 | 475 | -- | -- |
| 93 | 0.449 | 8.17 | 1.22 | 1.14 | -1.47 | -- | -- | 0.143 | 18.5 | 13.79 | 549 | -- | -- |
| 118.61 | 0.507 | 8.1 | 1.68 | -- | -1.27 | -- | 1.98 | 0.225 | -- | 2.601 | 1303 | -- | -- |
| 118.09 | 0.509 | 8.21 | 0.879 | 0.756 | -- | 0.323 | -- | -0.0795 | 18.3 | -- | -- | -- | -- |
| 118.35 | 0.509 | 8.21 | 0.875 | 0.757 | -- | -- | -- | -0.0785 | 18.3 | -- | -- | -- | -- |
| 121.73 | 0.514 | 8.15 | 1.24 | -- | -1.24 | -- | -- | 0.132 | -- | 7.455 | 1308 | -- | -- |
| 127.75 | 0.526 | 8.21 | -- | 0.993 | -0.92 | -- | -- | -0.0624 | 18.4 | 5.204 | 478 | -- | -- |
| 148.12 | 0.569 | 8.2 | 0.855 | -- | -- | -- | -- | -0.0949 | -- | -- | -- | -- | -- |
| 138.52 | 0.551 | 8.23 | -- | 0.745 | -- | -- | -- | -0.176 | 18.3 | -- | -- | -- | -- |
| 157.09 | 0.584 | 8.2 | -- | -- | -0.726 | -- | -- | -0.0831 | -- | 1.3 | 1287 | -- | -- |
| 167.38 | 0.604 | 8.22 | -- | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 2 | 79.69 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 16 | 81.87 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 30 | 83.31 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 40 | 83.89 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 67 | 84.92 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 80 | 85.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 91 | 85.46 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 103 | 85.63 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 124 | 85.98 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 144 | 86.34 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 152 | 86.48 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 165 | 86.70 | temperature | 15.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 179 | 86.88 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 188 | 86.96 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 214 | 87.24 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 10 |
| 225 | 87.33 | radiation | 1.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 230 | 87.37 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 324 | 88.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 23 |
| 328 | 88.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 329 | 88.09 | humidity | 60.0 | 270 | > th | dose independent | rect. | 16 | 10 |
| 333 | 88.14 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 409 | 88.67 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 10 |
| 426 | 88.79 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 430 | 88.82 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 440 | 88.88 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 19 |
| 441 | 88.88 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 19 |
| 451 | 88.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 479 | 89.05 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 484 | 89.07 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 489 | 89.09 | temperature | 10.0 | 270 | > th | dose dependent | sin | 21 | NA |
| 496 | 89.14 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 527 | 89.28 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 540 | 89.33 | temperature | 15.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 563 | 89.40 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 569 | 89.43 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 571 | 89.43 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 572 | 89.43 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 573 | 89.43 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 5 |
| 575 | 89.43 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 597 | 89.54 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 624 | 89.64 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 630 | 89.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 17 |
| 632 | 89.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 641 | 89.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 642 | 89.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 643 | 89.72 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 657 | 89.76 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 669 | 89.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 691 | 89.92 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 699 | 89.95 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 717 | 90.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 724 | 90.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 727 | 90.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 738 | 90.09 | wind | 9.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 743 | 90.10 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 749 | 90.14 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 859 | 90.53 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 870 | 90.56 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 951 | 90.76 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 10 |
| 960 | 90.77 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 966 | 90.79 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 973 | 90.80 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 1000 | 90.87 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 14 | 19 |