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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0506200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF250 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.66 (0.0833) R2 : 0.476
β1 : -6.2 (0.333) R2dD : 0.519 R2D : 0.325
β2 : 1.52 (0.236) R2dC : 0.0695 R2C : -0.0147
β3 : -2.95 (0.446) R2dE : 0.0709 R2E : -0.0346
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.73 (1.53) R2dD*E : 0.0392 R2D*E : -0.103
γ1 : -1.23 (0.187) R2dN8 : 0.0735 R2N8 : -0.0562
σ : 1.54
deviance : 1095.14
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_____
C
peak time of C : 4.9
E
wheather : radiation
threshold : 7.659
memory length : 1246
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 14.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1105.28 1.56 5.55 -6.1 1.21 -2.51 2.34 6.14 -1.08 4.97 7.993 1389 12.1 --
1132.41 1.57 5.51 -5.65 1.63 -2.84 3.51 -- -0.902 5.4 5.6 1236 14.1 --
1095.14 1.54 5.66 -6.2 1.52 -2.95 -- 7.73 -1.23 4.9 7.659 1246 14.5 --
1155.68 1.58 5.49 -5.57 1.77 -2.86 -- -- -0.883 5.33 6.181 1231 13.8 --
1192.22 1.61 5.57 -6.02 -- -2.01 -- 5.11 -1.07 -- 7.485 1413 14.3 --
1231.31 1.65 5.48 -5.45 0.973 -- 3.08 -- -0.636 4.57 -- -- -- --
1256.34 1.66 5.49 -5.47 0.991 -- -- -- -0.652 4.3 -- -- -- --
1232.65 1.64 5.58 -5.56 -- -1.76 -- -- -0.96 -- 6.845 1446 13.3 --
1906.53 2.03 5.54 -- 1.8 -3.03 -- -- -0.62 5.13 10 2614 13.7 --
1309.23 1.69 5.5 -5.43 -- -- -- -- -0.626 -- -- -- -- --
2046.12 2.12 5.35 -- 0.887 -- -- -- -0.0424 4.42 -- -- -- --
1954.63 2.06 5.48 -- -- -2.8 -- -- -0.972 -- 9.999 2908 12.5 --
2088.33 2.13 5.36 -- -- -- -- -- -0.0229 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1102.10 wind 1 90 < th dose independent rect. 4 1
2 1105.24 wind 1 90 < th dose dependent rect. 4 1
3 1107.29 wind 1 14400 < th dose independent rect. 1 2
4 1112.01 radiation 10 1440 < th dose independent rect. 15 1
5 1114.02 temperature 20 90 > th dose independent rect. 4 1
6 1114.22 wind 3 4320 > th dose independent rect. 8 1
7 1114.91 wind 3 4320 > th dose independent rect. 5 4
8 1114.93 temperature 20 90 > th dose dependent rect. 4 1
9 1114.97 radiation 10 1440 < th dose dependent rect. 11 7
13 1116.07 temperature 30 720 > th dose dependent rect. 18 1
27 1116.14 radiation 10 1440 < th dose dependent rect. 11 14
28 1116.15 radiation 10 1440 < th dose dependent rect. 11 16
38 1117.39 wind 1 14400 > th dose independent rect. 1 2
41 1118.75 wind 3 4320 < th dose independent rect. 5 4
43 1119.01 wind 3 4320 < th dose independent rect. 8 1
44 1119.04 radiation 10 1440 < th dose dependent rect. 15 2
66 1119.76 radiation 10 1440 < th dose dependent sin 17 NA
87 1120.87 radiation 10 1440 > th dose independent rect. 11 1
88 1121.04 radiation 10 1440 > th dose independent rect. 11 20
93 1121.68 radiation 10 1440 > th dose independent rect. 11 7
123 1123.66 humidity 50 1440 < th dose independent rect. 16 1
130 1124.49 humidity 50 1440 < th dose dependent rect. 16 1
148 1125.01 wind 1 30 < th dose independent rect. 4 4
154 1125.14 wind 3 4320 > th dose independent rect. 2 7
178 1126.49 radiation 10 1440 > th dose independent sin 16 NA
188 1127.64 wind 3 4320 < th dose independent rect. 2 7
191 1128.06 radiation 10 1440 > th dose independent rect. 15 2
195 1128.61 humidity 90 90 > th dose independent rect. 4 1
196 1128.62 wind 1 30 < th dose independent rect. 4 8
228 1130.09 humidity 90 90 > th dose dependent rect. 4 1
250 1131.08 humidity 80 1440 > th dose independent rect. 6 9
272 1131.80 humidity 70 1440 > th dose dependent rect. 1 14
276 1132.00 humidity 80 1440 > th dose independent rect. 2 13
278 1132.08 radiation 10 1440 > th dose independent rect. 15 15
297 1132.41 humidity 80 1440 > th dose independent rect. 24 15
305 1132.77 wind 3 4320 > th dose independent rect. 23 11
317 1133.40 humidity 50 1440 > th dose independent rect. 16 1
318 1133.40 wind 7 90 < th dose independent rect. 5 23
336 1134.21 radiation 10 1440 > th dose independent rect. 8 22
337 1134.22 temperature 15 90 > th dose independent rect. 5 23
340 1134.25 radiation 10 1440 > th dose independent rect. 8 10
382 1134.95 humidity 80 1440 < th dose independent rect. 7 7
391 1135.21 humidity 90 4320 > th dose dependent rect. 2 2
411 1135.73 wind 3 4320 < th dose independent rect. 23 10
438 1136.06 humidity 80 1440 < th dose independent rect. 2 12
439 1136.08 radiation 10 1440 > th dose independent rect. 15 23
442 1136.23 wind 5 4320 < th dose dependent rect. 6 1
448 1136.29 wind 9 4320 < th dose dependent rect. 6 1
468 1136.76 humidity 70 720 > th dose independent rect. 19 8
478 1137.06 humidity 80 1440 > th dose independent sin 3 NA
482 1137.21 wind 1 4320 > th dose dependent rect. 6 1
487 1137.31 radiation 40 1440 < th dose dependent rect. 16 1
500 1137.86 radiation 1 1440 > th dose dependent rect. 16 1
520 1138.19 wind 3 10 < th dose dependent rect. 4 2
575 1139.04 radiation 10 1440 > th dose independent no NA NA
576 1139.04 radiation 10 1440 > th dose independent rect. 5 13
663 1139.28 wind 5 4320 < th dose dependent rect. 6 3
677 1139.61 atmosphere 995 43200 > th dose independent sin 11 NA
678 1139.64 atmosphere 995 43200 < th dose independent sin 11 NA
679 1139.68 wind 1 4320 > th dose dependent rect. 6 3
681 1139.79 radiation 20 14400 < th dose independent rect. 5 1
684 1139.91 humidity 80 1440 < th dose independent sin 4 NA
687 1139.98 atmosphere 995 43200 < th dose independent rect. 17 16
688 1140.00 temperature 20 270 > th dose dependent rect. 1 4
694 1140.15 atmosphere 995 43200 > th dose independent rect. 17 16
702 1140.41 humidity 80 1440 < th dose dependent rect. 16 1
704 1140.45 atmosphere 995 43200 < th dose dependent rect. 14 14
716 1140.82 temperature 25 720 > th dose dependent rect. 21 2
729 1141.12 atmosphere 995 43200 < th dose dependent rect. 14 18
732 1141.15 humidity 70 1440 > th dose dependent sin 4 NA
752 1141.82 humidity 90 720 > th dose dependent rect. 2 3
800 1142.22 radiation 10 1440 < th dose dependent rect. 11 2
810 1142.48 wind 1 90 < th dose dependent rect. 4 7
819 1142.66 atmosphere 995 43200 < th dose dependent rect. 17 7
824 1142.85 atmosphere 995 43200 < th dose dependent sin 14 NA
833 1143.07 atmosphere 995 4320 > th dose independent rect. 5 1
846 1143.39 temperature 25 90 < th dose independent rect. 4 1
904 1144.30 atmosphere 1015 90 < th dose dependent rect. 4 1
920 1144.64 humidity 70 720 < th dose independent rect. 18 2
951 1145.21 atmosphere 995 43200 < th dose independent rect. 18 6
990 1145.80 radiation 20 14400 < th dose independent rect. 18 12