Os06g0506100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os06g0506100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.73 | 0.612 | 4.44 | 0.595 | 1.29 | 1.29 | 1.37 | 1.26 | -0.0262 | 18.8 | 20.14 | 1479 | -- | -- |
| 172.66 | 0.612 | 4.46 | 0.356 | 1.23 | 1.07 | 1.24 | -- | -0.021 | 18.7 | 20.51 | 1935 | -- | -- |
| 174.36 | 0.615 | 4.44 | 0.549 | 1.29 | 1.3 | -- | 1.21 | -0.0356 | 18.8 | 20.3 | 1543 | -- | -- |
| 176.77 | 0.619 | 4.46 | 0.353 | 1.31 | 1.09 | -- | -- | -0.0552 | 18.7 | 20.5 | 1383 | -- | -- |
| 255.28 | 0.744 | 4.41 | 0.541 | -- | 1.32 | -- | 1.44 | -0.0965 | -- | 20.6 | 1987 | -- | -- |
| 196.32 | 0.657 | 4.43 | 0.838 | 1.28 | -- | 1.52 | -- | 0.162 | 18.8 | -- | -- | -- | -- |
| 202.21 | 0.666 | 4.42 | 0.812 | 1.28 | -- | -- | -- | 0.166 | 18.8 | -- | -- | -- | -- |
| 256.53 | 0.746 | 4.47 | 0.452 | -- | 1.06 | -- | -- | -0.182 | -- | 25.09 | 1953 | -- | -- |
| 179.21 | 0.623 | 4.5 | -- | 1.26 | 1.23 | -- | -- | -0.153 | 18.8 | 20.5 | 1810 | -- | -- |
| 288.19 | 0.793 | 4.4 | 0.784 | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
| 219.58 | 0.693 | 4.44 | -- | 1.27 | -- | -- | -- | 0.0754 | 18.9 | -- | -- | -- | -- |
| 260.02 | 0.751 | 4.47 | -- | -- | 1.25 | -- | -- | -0.193 | -- | 20.65 | 2012 | -- | -- |
| 304.4 | 0.814 | 4.42 | -- | -- | -- | -- | -- | 0.0543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 3 | 168.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 8 | 169.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 9 | 169.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 14 | 169.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 17 | 169.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 20 | 169.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 25 | 169.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 34 | 169.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 38 | 169.24 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 43 | 169.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 53 | 169.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 67 | 169.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 68 | 169.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 75 | 169.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 14 |
| 89 | 169.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 134 | 169.70 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 157 | 169.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 179 | 169.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 194 | 169.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 235 | 169.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 255 | 170.03 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 286 | 170.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 310 | 170.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 326 | 170.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 22 |
| 343 | 170.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 469 | 170.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 491 | 170.62 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 537 | 170.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 568 | 170.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 579 | 170.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 585 | 171.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 618 | 171.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 644 | 171.26 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 671 | 171.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 673 | 171.37 | temperature | 10 | 10 | > th | dose dependent | sin | 20 | NA |
| 687 | 171.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 697 | 171.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 18 |
| 708 | 171.46 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 709 | 171.46 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 718 | 171.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 722 | 171.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 818 | 171.67 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 846 | 171.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 854 | 171.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 872 | 171.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 890 | 171.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 892 | 171.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 22 |
| 893 | 171.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 927 | 171.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 946 | 171.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 18 |