Os06g0505900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0505900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.16 | 0.578 | 6.92 | -1.79 | 0.549 | 2.18 | 1.04 | -0.523 | -1.03 | 9.02 | 15.5 | 709 | -- | -- |
| 151.35 | 0.573 | 6.91 | -1.69 | 0.545 | 2.19 | 1.15 | -- | -0.997 | 8.99 | 15.29 | 703 | -- | -- |
| 153.58 | 0.577 | 6.94 | -1.89 | 0.614 | 2.2 | -- | -1.28 | -1.06 | 7.72 | 16 | 606 | -- | -- |
| 155.07 | 0.58 | 6.91 | -1.65 | 0.608 | 2.27 | -- | -- | -1 | 7.61 | 14.92 | 595 | -- | -- |
| 156.99 | 0.584 | 6.93 | -1.69 | -- | 1.8 | -- | -0.11 | -1.01 | -- | 15.62 | 1441 | -- | -- |
| 213.49 | 0.685 | 6.85 | -1.14 | 0.0352 | -- | 0.994 | -- | -0.659 | 12 | -- | -- | -- | -- |
| 217.77 | 0.691 | 6.85 | -1.1 | 0.0314 | -- | -- | -- | -0.655 | 12.1 | -- | -- | -- | -- |
| 156.96 | 0.584 | 6.93 | -1.69 | -- | 1.73 | -- | -- | -1 | -- | 16.21 | 1449 | -- | -- |
| 218.52 | 0.688 | 6.85 | -- | 0.407 | 1.55 | -- | -- | -0.725 | 7.44 | 1.04 | 532 | -- | -- |
| 217.84 | 0.69 | 6.85 | -1.1 | -- | -- | -- | -- | -0.655 | -- | -- | -- | -- | -- |
| 249.73 | 0.739 | 6.82 | -- | 0.0489 | -- | -- | -- | -0.532 | 13.4 | -- | -- | -- | -- |
| 218.21 | 0.688 | 6.86 | -- | -- | 0.927 | -- | -- | -0.706 | -- | 21.9 | 1637 | -- | -- |
| 249.88 | 0.738 | 6.82 | -- | -- | -- | -- | -- | -0.533 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 3 | 144.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 15 | 146.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 32 | 148.17 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 40 | 148.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 45 | 148.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 106 | 150.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 139 | 150.75 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 142 | 150.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 17 |
| 144 | 150.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 154 | 150.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 354 | 151.27 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 367 | 151.29 | temperature | 15 | 1440 | > th | dose dependent | sin | 3 | NA |
| 374 | 151.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 382 | 151.31 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 390 | 151.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 414 | 151.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 13 |
| 469 | 151.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 536 | 151.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 540 | 151.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 593 | 151.57 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |