Os06g0505400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Abortive infection protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0505400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Abortive infection protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.08 | 0.27 | 8.88 | 0.205 | 0.368 | 1.2 | -0.312 | 0.435 | -0.306 | 11.2 | 25.82 | 71 | -- | -- |
| 33.31 | 0.269 | 8.88 | 0.273 | 0.375 | 1.18 | -0.363 | -- | -0.286 | 11.1 | 26.19 | 70 | -- | -- |
| 33.25 | 0.269 | 8.88 | 0.184 | 0.391 | 1.25 | -- | 0.573 | -0.295 | 11.9 | 26.24 | 70 | -- | -- |
| 33.7 | 0.27 | 8.87 | 0.282 | 0.398 | 1.22 | -- | -- | -0.274 | 12.1 | 26.88 | 80 | -- | -- |
| 38.62 | 0.289 | 8.89 | 0.239 | -- | 1.1 | -- | 0.104 | -0.309 | -- | 26.09 | 375 | -- | -- |
| 52.21 | 0.339 | 8.94 | 0.000296 | 0.238 | -- | -0.969 | -- | -0.546 | 7.8 | -- | -- | -- | -- |
| 54.82 | 0.347 | 8.94 | -0.0232 | 0.238 | -- | -- | -- | -0.544 | 8.49 | -- | -- | -- | -- |
| 38.64 | 0.289 | 8.89 | 0.254 | -- | 1.09 | -- | -- | -0.306 | -- | 26.2 | 389 | -- | -- |
| 35.58 | 0.278 | 8.88 | -- | 0.39 | 1.12 | -- | -- | -0.318 | 11.7 | 26.78 | 67 | -- | -- |
| 57.98 | 0.356 | 8.94 | -0.0221 | -- | -- | -- | -- | -0.541 | -- | -- | -- | -- | -- |
| 54.83 | 0.346 | 8.93 | -- | 0.238 | -- | -- | -- | -0.541 | 8.5 | -- | -- | -- | -- |
| 40.19 | 0.295 | 8.9 | -- | -- | 0.993 | -- | -- | -0.352 | -- | 26.3 | 394 | -- | -- |
| 57.99 | 0.355 | 8.94 | -- | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.11 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 5 | 33.42 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 6 | 33.44 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 7 | 33.48 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 8 | 33.51 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 12 | 33.65 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 15 | 33.68 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 17 | 33.69 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 19 | 33.73 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 21 | 33.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 44 | 34.00 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 69 | 34.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 81 | 34.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 168 | 34.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 188 | 34.94 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 209 | 34.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 324 | 35.35 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 429 | 35.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 453 | 35.64 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 17 |
| 477 | 35.68 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 478 | 35.68 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 520 | 35.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 540 | 35.76 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 543 | 35.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 574 | 35.83 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 595 | 35.86 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 603 | 35.87 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 778 | 36.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 952 | 36.27 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |