Os06g0504100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0504100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.84 | 0.669 | 6.21 | 0.831 | 2.26 | 2.51 | -2.72 | -2.22 | 0.518 | 16.5 | 23 | 858 | -- | -- |
| 207.89 | 0.672 | 6.25 | 0.585 | 2.24 | 3.03 | -2.82 | -- | 0.445 | 16.4 | 22.36 | 890 | -- | -- |
| 221.09 | 0.693 | 6.21 | 0.869 | 2.23 | 2.63 | -- | -2.47 | 0.51 | 16.6 | 22.72 | 911 | -- | -- |
| 228.07 | 0.703 | 6.25 | 0.681 | 2.2 | 3.27 | -- | -- | 0.495 | 16.7 | 22.26 | 911 | -- | -- |
| 479.24 | 1.02 | 6.19 | 0.858 | -- | 2.99 | -- | -2.35 | 0.503 | -- | 22.7 | 1024 | -- | -- |
| 309.55 | 0.825 | 6.34 | -0.198 | 2.31 | -- | -3.29 | -- | 0.0173 | 16 | -- | -- | -- | -- |
| 339.61 | 0.863 | 6.35 | -0.242 | 2.31 | -- | -- | -- | -0.000849 | 16.2 | -- | -- | -- | -- |
| 483.66 | 1.02 | 6.22 | 0.651 | -- | 3.62 | -- | -- | 0.459 | -- | 22.28 | 1032 | -- | -- |
| 235.68 | 0.715 | 6.28 | -- | 2.24 | 2.85 | -- | -- | 0.36 | 16.7 | 22.42 | 877 | -- | -- |
| 628.86 | 1.17 | 6.34 | -0.334 | -- | -- | -- | -- | -0.0623 | -- | -- | -- | -- | -- |
| 341.15 | 0.864 | 6.35 | -- | 2.32 | -- | -- | -- | 0.0261 | 16.2 | -- | -- | -- | -- |
| 492.92 | 1.03 | 6.25 | -- | -- | 3.21 | -- | -- | 0.352 | -- | 22.46 | 1026 | -- | -- |
| 631.81 | 1.17 | 6.33 | -- | -- | -- | -- | -- | -0.0252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 18 |
| 15 | 200.90 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 24 | 201.62 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 29 | 201.86 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 11 |
| 31 | 201.97 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 17 |
| 40 | 202.47 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 44 | 202.66 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 83 | 204.62 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 16 |
| 87 | 204.66 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 14 |
| 112 | 205.61 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 114 | 205.63 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 7 |
| 151 | 206.68 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 16 |
| 329 | 209.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 388 | 210.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 452 | 212.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 493 | 212.78 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 515 | 213.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 529 | 213.34 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 22 |
| 549 | 213.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 589 | 214.37 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 625 | 214.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 638 | 215.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 692 | 215.91 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 23 |
| 706 | 216.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 795 | 217.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 809 | 217.40 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 815 | 217.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 822 | 217.55 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 827 | 217.65 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 17 |
| 828 | 217.65 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |