Os06g0502900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0502900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.8 | 0.234 | 10.3 | 0.7 | 0.205 | -1.32 | -0.477 | 1.22 | 0.344 | 11.4 | 20.94 | 9 | -- | -- |
| 25.77 | 0.236 | 10.4 | 0.485 | 0.196 | -1.25 | -0.204 | -- | 0.282 | 10.9 | 20.4 | 8 | -- | -- |
| 25.53 | 0.235 | 10.3 | 0.594 | 0.205 | -1.29 | -- | 0.72 | 0.314 | 11.2 | 20.91 | 8 | -- | -- |
| 25.95 | 0.237 | 10.4 | 0.48 | 0.199 | -1.26 | -- | -- | 0.283 | 11.1 | 20.4 | 8 | -- | -- |
| 27.66 | 0.245 | 10.4 | 0.553 | -- | -1.15 | -- | 0.632 | 0.29 | -- | 21.01 | 14 | -- | -- |
| 49.44 | 0.33 | 10.4 | 0.22 | 0.37 | -- | 0.348 | -- | 0.0713 | 3.87 | -- | -- | -- | -- |
| 49.78 | 0.33 | 10.4 | 0.216 | 0.374 | -- | -- | -- | 0.0693 | 4.04 | -- | -- | -- | -- |
| 28 | 0.246 | 10.4 | 0.445 | -- | -1.12 | -- | -- | 0.258 | -- | 20.9 | 8 | -- | -- |
| 31.48 | 0.263 | 10.4 | -- | 0.167 | -1.1 | -- | -- | 0.203 | 9.87 | 20.9 | 6 | -- | -- |
| 57.4 | 0.354 | 10.4 | 0.231 | -- | -- | -- | -- | 0.0792 | -- | -- | -- | -- | -- |
| 51.01 | 0.334 | 10.4 | -- | 0.378 | -- | -- | -- | 0.0452 | 4.03 | -- | -- | -- | -- |
| 32.95 | 0.267 | 10.4 | -- | -- | -1.01 | -- | -- | 0.19 | -- | 21.75 | 8 | -- | -- |
| 58.8 | 0.358 | 10.4 | -- | -- | -- | -- | -- | 0.0536 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 3 | 25.08 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 4 | 25.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 18 | 26.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 28 | 26.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 49 | 27.52 | temperature | 20 | 10 | > th | dose dependent | sin | 23 | NA |
| 53 | 27.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 58 | 27.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 60 | 27.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 66 | 27.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 70 | 27.91 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 83 | 28.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 86 | 28.21 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 89 | 28.25 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 104 | 28.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 107 | 28.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 109 | 28.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 113 | 28.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 125 | 28.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 133 | 28.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 141 | 28.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 158 | 28.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 172 | 29.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 184 | 29.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 216 | 29.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 229 | 29.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 251 | 29.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 253 | 29.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 304 | 30.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 456 | 30.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 591 | 31.41 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 16 |
| 713 | 31.82 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 23 |
| 740 | 31.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 752 | 31.93 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 756 | 31.95 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 773 | 32.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 783 | 32.06 | temperature | 25 | 30 | > th | dose independent | sin | 22 | NA |
| 788 | 32.07 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 23 |
| 845 | 32.21 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 889 | 32.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 897 | 32.37 | temperature | 25 | 30 | < th | dose independent | sin | 22 | NA |
| 925 | 32.44 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 926 | 32.44 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 22 |
| 941 | 32.48 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 966 | 32.54 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 968 | 32.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 972 | 32.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 973 | 32.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 974 | 32.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 993 | 32.60 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 994 | 32.60 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 23 |