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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0502800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : p53-like transcription factor, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.036) R2 : 0.455
β1 : 0.707 (0.126) R2dD : 0.0407 R2D : -0.0737
β2 : -- (--) R2dC : -- R2C : --
β3 : 117 (6.13) R2dE : 41.1 R2E : -40.7
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 253 (13.2) R2dD*E : 40.9 R2D*E : -40.4
γ1 : 0.236 (0.0721) R2dN8 : 0.0173 R2N8 : -0.0742
σ : 0.631
deviance : 183.41
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.97
memory length : 93
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.07
open length of G : 1.35

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.4 0.633 3.22 0.685 0.109 117 0.558 251 0.234 11 19.98 91 8.04 0.931
13572.01 5.43 3.18 1.55 0.393 116 -0.421 -- 0.371 22.9 19.95 91 8.18 1.07
182.66 0.629 3.22 0.706 0.109 117 -- 252 0.236 12.1 19.95 93 8.08 1.37
11747.34 5.05 2.27 6.31 2.92 102 -- -- 3.37 20.9 19.11 35 9.9 0.55
183.41 0.631 3.22 0.707 -- 117 -- 253 0.236 -- 19.97 93 8.07 1.35
326.59 0.847 2.97 0.185 0.2 -- 0.908 -- 0.21 10.4 -- -- -- --
329.89 0.851 2.97 0.223 0.196 -- -- -- 0.213 11 -- -- -- --
332.28 0.853 2.98 0.218 -- -0.0367 -- -- 0.212 -- 20.11 10 9.66 2.2
330.71 0.852 2.98 -- 0.206 -0.29 -- -- 0.184 11 20.4 23 8.61 7.01
332.28 0.852 2.98 0.218 -- -- -- -- 0.212 -- -- -- -- --
331.2 0.851 2.98 -- 0.194 -- -- -- 0.188 11 -- -- -- --
275.5 0.773 2.94 -- -- 3.4 -- -- 0.328 -- 20.7 104 7.98 0.582
333.54 0.852 2.98 -- -- -- -- -- 0.188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.24 temperature 25 90 < th dose dependent rect. 8 2
4 258.15 temperature 20 90 < th dose independent rect. 8 1
17 264.94 humidity 80 270 < th dose dependent rect. 6 1
18 267.63 humidity 80 270 < th dose independent rect. 6 1
29 280.12 temperature 20 270 < th dose independent rect. 6 3
32 280.60 temperature 20 270 < th dose independent rect. 6 12
45 282.88 humidity 80 1440 > th dose independent rect. 4 1
81 286.32 humidity 80 720 > th dose independent rect. 1 6
165 294.05 wind 3 270 > th dose dependent rect. 5 2
216 296.88 temperature 25 10 < th dose independent rect. 9 1
245 298.15 temperature 20 1440 > th dose independent rect. 8 1
336 301.65 wind 3 270 > th dose independent rect. 5 2
393 302.78 temperature 20 1440 > th dose independent rect. 8 4
397 302.82 wind 3 90 > th dose independent rect. 8 1
439 303.64 radiation 20 10 < th dose independent rect. 10 1
497 305.73 temperature 20 270 < th dose dependent rect. 6 13
542 306.51 temperature 20 1440 > th dose independent rect. 7 12
575 307.39 humidity 70 10 > th dose independent rect. 9 1
589 307.68 humidity 80 720 < th dose independent sin 8 NA
631 308.65 temperature 20 1440 > th dose independent rect. 7 7
662 309.31 humidity 80 720 > th dose independent sin 8 NA
676 309.57 temperature 20 720 < th dose dependent rect. 22 1
704 310.02 humidity 70 720 > th dose dependent rect. 1 6
750 310.82 temperature 20 1440 > th dose independent rect. 18 1
762 310.98 temperature 20 270 > th dose independent rect. 6 13
786 311.29 temperature 20 270 < th dose independent sin 23 NA
794 311.42 temperature 20 270 > th dose independent sin 23 NA
813 311.70 temperature 20 1440 < th dose independent rect. 18 1
860 312.37 wind 3 10 > th dose independent rect. 10 1
879 312.59 radiation 40 10 < th dose dependent rect. 9 1
982 313.63 wind 3 10 > th dose independent rect. 8 3
989 313.72 temperature 20 1440 > th dose independent rect. 16 3