Os06g0500100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0500100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.79 | 0.422 | 6.73 | -0.984 | 0.314 | -1.14 | -0.261 | -0.85 | 0.15 | 7.66 | 24.82 | 36 | -- | -- |
| 82.07 | 0.422 | 6.74 | -1.09 | 0.313 | -1.06 | -0.179 | -- | 0.133 | 7.49 | 25 | 33 | -- | -- |
| 80.98 | 0.419 | 6.73 | -0.996 | 0.313 | -1.14 | -- | -0.809 | 0.148 | 7.7 | 24.86 | 35 | -- | -- |
| 82.11 | 0.422 | 6.75 | -1.11 | 0.312 | -1.07 | -- | -- | 0.124 | 7.78 | 24.94 | 34 | -- | -- |
| 85.97 | 0.434 | 6.74 | -0.998 | -- | -1.15 | -- | -0.782 | 0.149 | -- | 24.86 | 35 | -- | -- |
| 98.72 | 0.466 | 6.7 | -0.86 | 0.389 | -- | 0.0363 | -- | 0.33 | 9.94 | -- | -- | -- | -- |
| 98.72 | 0.465 | 6.7 | -0.859 | 0.389 | -- | -- | -- | 0.33 | 9.92 | -- | -- | -- | -- |
| 87.06 | 0.436 | 6.75 | -1.11 | -- | -1.1 | -- | -- | 0.127 | -- | 24.78 | 18 | -- | -- |
| 111.54 | 0.495 | 6.7 | -- | 0.322 | -0.636 | -- | -- | 0.318 | 8.97 | 25 | 25 | -- | -- |
| 107.81 | 0.485 | 6.71 | -0.864 | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
| 118.18 | 0.509 | 6.68 | -- | 0.393 | -- | -- | -- | 0.426 | 10.1 | -- | -- | -- | -- |
| 117.22 | 0.506 | 6.72 | -- | -- | -0.736 | -- | -- | 0.301 | -- | 25.1 | 2 | -- | -- |
| 127.49 | 0.527 | 6.69 | -- | -- | -- | -- | -- | 0.426 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.59 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 22 |
| 11 | 80.09 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 19 |
| 13 | 80.10 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 10 | 21 |
| 32 | 80.49 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 8 | 23 |
| 59 | 80.76 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 61 | 80.83 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 66 | 80.86 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 67 | 80.87 | temperature | 25.0 | 30 | < th | dose dependent | no | NA | NA |
| 69 | 80.88 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 73 | 80.93 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 77 | 80.94 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 128 | 81.82 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 197 | 83.13 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 20 | 11 |
| 250 | 83.69 | temperature | 25.0 | 30 | < th | dose dependent | sin | 7 | NA |
| 283 | 83.99 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 285 | 83.99 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 308 | 84.12 | temperature | 20.0 | 10 | < th | dose independent | rect. | 21 | 16 |
| 326 | 84.23 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 337 | 84.27 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 357 | 84.34 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 359 | 84.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 404 | 84.56 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 406 | 84.56 | temperature | 20.0 | 10 | < th | dose independent | rect. | 21 | 22 |
| 421 | 84.62 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 475 | 84.87 | temperature | 20.0 | 30 | < th | dose independent | rect. | 17 | 20 |
| 476 | 84.88 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 7 |
| 477 | 84.88 | temperature | 10.0 | 30 | > th | dose dependent | sin | 8 | NA |
| 507 | 85.00 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 580 | 85.23 | temperature | 20.0 | 30 | < th | dose independent | rect. | 10 | 21 |
| 581 | 85.23 | temperature | 20.0 | 30 | < th | dose independent | rect. | 8 | 23 |
| 591 | 85.26 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 610 | 85.31 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 629 | 85.36 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 653 | 85.45 | temperature | 20.0 | 30 | > th | dose independent | no | NA | NA |
| 683 | 85.54 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 687 | 85.55 | temperature | 20.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 688 | 85.55 | temperature | 20.0 | 30 | < th | dose independent | rect. | 14 | 23 |
| 696 | 85.58 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 708 | 85.63 | temperature | 20.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 725 | 85.67 | temperature | 20.0 | 30 | < th | dose independent | no | NA | NA |
| 728 | 85.68 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 731 | 85.68 | temperature | 20.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 737 | 85.69 | temperature | 20.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 739 | 85.70 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 13 |
| 747 | 85.71 | temperature | 20.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 756 | 85.76 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 765 | 85.79 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 769 | 85.81 | temperature | 20.0 | 10 | < th | dose independent | rect. | 21 | 10 |
| 789 | 85.86 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 806 | 85.91 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 2 | 10 |
| 808 | 85.92 | temperature | 20.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 824 | 85.96 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 829 | 85.97 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 874 | 86.04 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 9 |
| 880 | 86.05 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 902 | 86.14 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 973 | 86.29 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 981 | 86.30 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |