Os06g0499200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0499200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6	(0.0332)	R²	:	0.753
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	1.8	(0.114)	R²_dC	:	0.234	R²_C	:	0.505
β₃	:	2.43	(0.167)	R²_dE	:	0.202	R²_E	:	0.486
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.546	(0.0701)	R²_dN8	:	0.0422	R²_N8	:	0.0321
σ	:	0.624
deviance	:	179.63
__

_____

C
peak time of C	:	16.9
E
wheather	:	temperature
threshold	:	10.03
memory length	:	135
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	7.63
open length of G	:	20.8

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
173.23	0.618	6.03	-0.509	1.76	2.49	-0.648	-0.302	0.435	17	12.72	114	7.82	20.8
173.2	0.613	6.02	-0.469	1.75	2.52	-0.778	--	0.451	17	12.31	117	7.77	20.8
174.01	0.614	6.03	-0.517	1.78	2.44	--	-0.624	0.433	17	12.37	114	7.85	20.7
174.46	0.615	6.02	-0.465	1.74	2.56	--	--	0.467	16.9	11.36	132	7.63	20.9
231.49	0.709	6.01	-0.55	--	4.03	--	0.222	0.446	--	11.03	186	7.37	19.8
262.62	0.76	6	-0.0229	2.9	--	-0.462	--	0.606	17	--	--	--	--
263.17	0.76	6.01	-0.0239	2.9	--	--	--	0.603	17	--	--	--	--
226.1	0.7	6.01	-0.671	--	3.94	--	--	0.341	--	11.35	209	7.3	19.3
179.63	0.624	6	--	1.8	2.43	--	--	0.546	16.9	10.03	135	7.63	20.8
704.41	1.24	5.97	-0.129	--	--	--	--	0.529	--	--	--	--	--
263.18	0.759	6	--	2.9	--	--	--	0.606	17	--	--	--	--
234.45	0.713	5.99	--	--	3.7	--	--	0.458	--	10.25	252	7.15	18.4
704.84	1.24	5.97	--	--	--	--	--	0.544	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	176.42	temperature	15	90	> th	dose dependent	rect.	8	21
24	186.96	temperature	20	90	> th	dose independent	rect.	8	21
58	194.86	temperature	20	10	> th	dose independent	rect.	8	22
77	197.88	temperature	30	270	< th	dose dependent	rect.	10	22
87	198.50	temperature	30	270	< th	dose dependent	rect.	1	22
104	199.77	temperature	30	90	< th	dose dependent	rect.	4	20
112	200.24	temperature	30	10	< th	dose dependent	rect.	5	19
140	201.94	temperature	10	270	> th	dose dependent	rect.	22	13
164	203.20	temperature	30	90	< th	dose dependent	rect.	15	22
173	203.81	temperature	30	90	< th	dose dependent	rect.	13	23
217	204.85	temperature	30	90	< th	dose dependent	no	NA	NA
220	205.02	temperature	30	90	< th	dose dependent	rect.	19	23
223	205.06	temperature	30	90	< th	dose dependent	rect.	17	15
234	205.28	temperature	30	270	< th	dose dependent	rect.	15	17
251	205.83	temperature	30	270	< th	dose dependent	rect.	13	20
343	207.66	temperature	15	90	> th	dose dependent	rect.	20	23
381	208.34	temperature	20	270	> th	dose independent	rect.	21	6
429	209.44	atmosphere	1010	90	< th	dose independent	rect.	8	21
440	209.65	temperature	30	10	< th	dose dependent	rect.	16	20
442	209.70	temperature	30	90	< th	dose dependent	rect.	19	13
465	210.01	temperature	10	90	> th	dose dependent	no	NA	NA
488	210.24	temperature	15	270	> th	dose dependent	rect.	21	6
506	210.55	temperature	10	90	> th	dose dependent	rect.	8	11
542	210.99	temperature	25	270	< th	dose independent	rect.	2	21
547	211.07	temperature	15	270	> th	dose dependent	rect.	17	23
593	211.68	temperature	20	270	> th	dose independent	rect.	22	4
611	211.94	temperature	20	90	> th	dose independent	rect.	23	6
624	212.01	humidity	50	14400	> th	dose independent	rect.	6	3
652	212.30	temperature	20	270	> th	dose independent	rect.	22	14
678	212.55	temperature	30	270	< th	dose dependent	sin	9	NA
681	212.56	temperature	10	270	> th	dose dependent	sin	9	NA
743	213.22	temperature	30	90	< th	dose dependent	rect.	19	16
750	213.28	wind	7	90	< th	dose independent	rect.	8	21
752	213.29	temperature	25	720	< th	dose dependent	rect.	6	17
858	214.60	temperature	15	1440	> th	dose independent	rect.	6	3
863	214.61	temperature	30	90	< th	dose dependent	rect.	5	12
889	214.96	temperature	15	90	> th	dose independent	rect.	8	11
908	215.31	temperature	15	270	> th	dose dependent	rect.	22	4
914	215.39	humidity	90	90	< th	dose independent	rect.	8	11
966	216.15	temperature	20	270	> th	dose independent	rect.	20	21
979	216.35	temperature	20	270	> th	dose independent	rect.	20	23