Os06g0497400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0497400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 211.96 | 0.684 | 4.78 | -0.15 | 0.694 | 0.319 | -0.0166 | 3.39 | 0.0461 | 18.2 | 999.1 | 1871 | -- | -- |
| 213.63 | 0.681 | 4.81 | -0.282 | 0.684 | 0.94 | -0.049 | -- | 0.0537 | 18.2 | 999 | 1870 | -- | -- |
| 211.56 | 0.677 | 4.78 | -0.178 | 0.697 | 0.413 | -- | 3.13 | 0.0369 | 18.2 | 999 | 2675 | -- | -- |
| 213.6 | 0.681 | 4.8 | -0.291 | 0.697 | 0.935 | -- | -- | 0.0525 | 18.3 | 999 | 1870 | -- | -- |
| 235.8 | 0.715 | 4.77 | -0.199 | -- | 0.469 | -- | 2.99 | 0.0311 | -- | 998.6 | 2707 | -- | -- |
| 226.88 | 0.706 | 4.82 | -0.17 | 0.703 | -- | 0.0263 | -- | 0.00328 | 18.2 | -- | -- | -- | -- |
| 226.88 | 0.705 | 4.82 | -0.17 | 0.703 | -- | -- | -- | 0.00339 | 18.2 | -- | -- | -- | -- |
| 238.77 | 0.72 | 4.79 | -0.311 | -- | 0.958 | -- | -- | 0.039 | -- | 999 | 1955 | -- | -- |
| 215.77 | 0.684 | 4.8 | -- | 0.702 | 0.873 | -- | -- | 0.0813 | 18.2 | 999 | 1870 | -- | -- |
| 252.5 | 0.743 | 4.8 | -0.19 | -- | -- | -- | -- | -0.0121 | -- | -- | -- | -- | -- |
| 227.65 | 0.706 | 4.81 | -- | 0.705 | -- | -- | -- | 0.0224 | 18.2 | -- | -- | -- | -- |
| 241.26 | 0.723 | 4.78 | -- | -- | 0.889 | -- | -- | 0.0693 | -- | 999 | 1955 | -- | -- |
| 253.45 | 0.743 | 4.8 | -- | -- | -- | -- | -- | 0.00898 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 207.77 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 2 | 207.78 | temperature | 20 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 4 | 207.81 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 6 | 5 |
| 10 | 207.98 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 6 | 5 |
| 18 | 208.09 | temperature | 20 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 22 | 208.12 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 27 | 208.16 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 186 | 210.23 | atmosphere | 1000 | 1440 | < th | dose independent | sin | 6 | NA |
| 189 | 210.31 | atmosphere | 1000 | 1440 | > th | dose independent | sin | 6 | NA |
| 280 | 211.06 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 7 |
| 289 | 211.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 5 |
| 301 | 211.21 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 8 | 6 |
| 309 | 211.31 | temperature | 20 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 358 | 211.59 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 10 |
| 367 | 211.62 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 7 |
| 370 | 211.64 | atmosphere | 1000 | 1440 | < th | dose dependent | sin | 8 | NA |
| 387 | 211.77 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 408 | 211.85 | radiation | 10 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 415 | 211.89 | wind | 7 | 10 | < th | dose independent | rect. | 8 | 6 |
| 430 | 211.95 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 11 |
| 463 | 212.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 493 | 212.33 | humidity | 90 | 30 | < th | dose independent | rect. | 8 | 6 |
| 497 | 212.34 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 499 | 212.35 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 522 | 212.43 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 524 | 212.44 | humidity | 90 | 270 | < th | dose independent | rect. | 3 | 3 |
| 545 | 212.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 559 | 212.64 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 572 | 212.70 | wind | 7 | 30 | < th | dose independent | rect. | 14 | 18 |
| 594 | 212.76 | temperature | 20 | 30 | > th | dose independent | rect. | 8 | 6 |
| 607 | 212.83 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 2 |
| 634 | 212.97 | wind | 3 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 748 | 213.35 | temperature | 20 | 90 | < th | dose independent | sin | 1 | NA |
| 758 | 213.39 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 2 |
| 772 | 213.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 779 | 213.44 | wind | 7 | 10 | < th | dose independent | rect. | 20 | 18 |
| 875 | 213.67 | temperature | 30 | 30 | < th | dose independent | rect. | 14 | 18 |
| 877 | 213.68 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 8 | 2 |
| 899 | 213.72 | wind | 1 | 10 | > th | dose independent | rect. | 1 | 7 |
| 930 | 213.77 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 11 | 9 |
| 943 | 213.79 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 11 | 9 |
| 993 | 213.84 | temperature | 25 | 10 | < th | dose dependent | sin | 2 | NA |