Os06g0496800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to S-locus receptor kinase precursor.
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Os06g0496800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to S-locus receptor kinase precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.69 | 0.437 | 10.2 | -0.518 | 1.91 | 1.27 | 0.53 | -3.79 | 0.202 | 1.04 | 26.08 | 5646 | -- | -- |
| 87.55 | 0.436 | 10.1 | 0.454 | 1.88 | 0.92 | 0.522 | -- | 0.156 | 1.05 | 25.1 | 8482 | -- | -- |
| 87.67 | 0.436 | 10.2 | -0.522 | 1.91 | 1.25 | -- | -3.81 | 0.22 | 1.04 | 26.51 | 5661 | -- | -- |
| 88.7 | 0.439 | 10.1 | 0.441 | 1.88 | 0.927 | -- | -- | 0.154 | 1.06 | 25.2 | 8466 | -- | -- |
| 272.75 | 0.769 | 10.2 | -0.325 | -- | 1.93 | -- | -3.04 | 0.115 | -- | 24.11 | 1085 | -- | -- |
| 122.64 | 0.519 | 10.1 | 0.838 | 1.96 | -- | 0.651 | -- | 0.5 | 1.1 | -- | -- | -- | -- |
| 124.41 | 0.522 | 10.1 | 0.815 | 1.96 | -- | -- | -- | 0.496 | 1.11 | -- | -- | -- | -- |
| 277.65 | 0.776 | 10.1 | 0.429 | -- | 1.63 | -- | -- | 0.305 | -- | 24.1 | 1080 | -- | -- |
| 91.9 | 0.446 | 10.2 | -- | 1.9 | 1.19 | -- | -- | 0.0349 | 1.09 | 20.28 | 11141 | -- | -- |
| 362.88 | 0.89 | 10 | 0.889 | -- | -- | -- | -- | 0.535 | -- | -- | -- | -- | -- |
| 141.89 | 0.557 | 10.1 | -- | 1.97 | -- | -- | -- | 0.405 | 1.13 | -- | -- | -- | -- |
| 281.66 | 0.782 | 10.1 | -- | -- | 1.72 | -- | -- | 0.248 | -- | 24 | 1085 | -- | -- |
| 383.74 | 0.914 | 10.1 | -- | -- | -- | -- | -- | 0.436 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 3 | 85.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 7 | 85.63 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 12 | 86.41 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 13 | 86.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 18 | 87.07 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 19 | 87.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 21 | 87.12 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 24 | 87.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 26 | 87.40 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 27 | 87.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 11 |
| 32 | 87.49 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 33 | 87.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 37 | 87.54 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 47 | 87.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 68 | 87.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 16 |
| 73 | 87.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 18 |
| 74 | 87.71 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 79 | 87.72 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 18 |
| 81 | 87.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 84 | 87.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 20 |
| 96 | 87.79 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 114 | 87.84 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 117 | 87.84 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 12 |
| 118 | 87.85 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 119 | 87.85 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 132 | 87.89 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 141 | 87.90 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 182 | 88.01 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 193 | 88.06 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 201 | 88.10 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 202 | 88.10 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 215 | 88.13 | temperature | 25 | 14400 | > th | dose dependent | sin | 16 | NA |
| 244 | 88.20 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 246 | 88.21 | temperature | 25 | 14400 | > th | dose independent | sin | 4 | NA |
| 275 | 88.28 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 22 |
| 284 | 88.30 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 289 | 88.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 293 | 88.32 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 300 | 88.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 20 |
| 334 | 88.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 17 |
| 337 | 88.39 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 339 | 88.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 349 | 88.41 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 359 | 88.43 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 367 | 88.44 | temperature | 25 | 14400 | < th | dose independent | sin | 4 | NA |
| 382 | 88.47 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 395 | 88.48 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 428 | 88.50 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 443 | 88.52 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 457 | 88.54 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 464 | 88.55 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 514 | 88.59 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 525 | 88.61 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 22 |
| 533 | 88.63 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 548 | 88.64 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 20 |
| 699 | 88.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 706 | 88.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 761 | 88.89 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 779 | 88.91 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 817 | 88.94 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 21 |
| 852 | 88.97 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 858 | 88.98 | wind | 3 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 886 | 88.99 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 908 | 89.01 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 18 |