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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0495100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Multi antimicrobial extrusion protein MatE family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.33 (0.0535) R2 : 0.65
β1 : 1.07 (0.206) R2dD : 0.0309 R2D : -0.00422
β2 : 0.931 (0.121) R2dC : 0.0461 R2C : -0.0888
β3 : -2.97 (0.236) R2dE : 0.176 R2E : 0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -17.7 (0.993) R2dD*E : 0.358 R2D*E : 0.202
γ1 : 0.886 (0.112) R2dN8 : 0.0804 R2N8 : -0.0436
σ : 0.871
deviance : 349.41
__
_____
C
peak time of C : 7.04
E
wheather : radiation
threshold : 1.07
memory length : 4397
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
343.7 0.871 5.33 1.13 0.927 -3.02 1.71 -17.7 0.866 7.37 1.065 4398 18 11
427.22 0.963 5.62 1.94 0.912 -3.28 1.61 -- 1.09 7.4 1.059 39845 18 11.3
349.41 0.871 5.33 1.07 0.931 -2.97 -- -17.7 0.886 7.04 1.07 4397 18 11
425.47 0.961 5.61 2.34 0.929 -2.95 -- -- 1.15 7.42 1.05 39816 18 11.4
375.5 0.903 5.27 0.74 -- -2.82 -- -17.2 0.978 -- 1.355 4909 17.9 11
640.35 1.19 5.66 3.2 0.871 -- 1.91 -- 0.916 8.19 -- -- -- --
650.92 1.19 5.66 3.25 0.884 -- -- -- 0.913 7.74 -- -- -- --
419.2 0.954 5.49 1.43 -- -3.44 -- -- 1.65 -- 1.551 23296 17.7 11.1
486.67 1.03 5.61 -- 1.02 -2.91 -- -- 1.14 6.97 1.23 23940 18.1 11.4
693.09 1.23 5.68 3.26 -- -- -- -- 0.925 -- -- -- -- --
929.72 1.43 5.74 -- 0.91 -- -- -- 0.55 7.5 -- -- -- --
457.68 0.996 5.53 -- -- -3.71 -- -- 1.57 -- 1.553 23305 17.7 11.6
974.04 1.46 5.76 -- -- -- -- -- 0.563 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 320.99 humidity 90 43200 > th dose independent rect. 21 1
2 321.76 temperature 25 14400 > th dose independent rect. 6 2
3 321.89 temperature 25 14400 < th dose independent rect. 6 2
4 323.12 temperature 25 14400 > th dose dependent rect. 7 3
5 323.26 temperature 25 14400 > th dose dependent rect. 8 1
7 323.51 temperature 25 14400 > th dose dependent rect. 6 6
36 325.02 temperature 25 14400 > th dose dependent sin 6 NA
55 325.81 temperature 25 14400 > th dose dependent rect. 17 21
69 326.09 temperature 25 14400 > th dose dependent rect. 20 18
71 326.14 temperature 25 14400 > th dose dependent rect. 6 16
81 326.27 temperature 25 14400 > th dose dependent rect. 14 20
153 326.66 temperature 25 14400 > th dose dependent rect. 20 23
167 326.75 temperature 25 14400 > th dose dependent no NA NA
168 326.75 humidity 90 43200 > th dose dependent rect. 21 1
276 328.13 temperature 25 14400 > th dose dependent rect. 17 2
285 328.26 humidity 90 43200 > th dose independent rect. 9 2
297 328.44 temperature 25 14400 < th dose independent rect. 17 16
298 328.48 temperature 25 14400 > th dose independent rect. 17 16
315 329.07 temperature 25 14400 > th dose dependent rect. 14 8
333 329.37 humidity 90 43200 < th dose independent rect. 21 1
366 329.63 temperature 25 14400 > th dose independent rect. 17 9
371 329.69 temperature 30 14400 < th dose independent rect. 13 2
385 329.91 temperature 25 14400 < th dose independent rect. 17 9
421 330.41 temperature 30 14400 > th dose independent rect. 13 2
487 331.93 temperature 25 14400 > th dose independent rect. 18 4
523 332.81 temperature 25 14400 < th dose independent rect. 18 4
544 333.19 temperature 30 14400 < th dose independent rect. 22 18
547 333.20 temperature 30 14400 < th dose independent rect. 5 11
554 333.22 temperature 30 14400 < th dose independent rect. 8 8
556 333.22 temperature 30 14400 < th dose independent rect. 2 14
568 333.41 temperature 25 14400 < th dose independent sin 11 NA
583 333.76 temperature 25 14400 > th dose independent sin 12 NA
636 334.34 temperature 30 14400 < th dose independent rect. 13 21
640 334.43 humidity 80 43200 > th dose dependent rect. 10 1
643 334.47 temperature 30 14400 > th dose independent rect. 8 8
657 334.48 temperature 25 14400 > th dose independent rect. 20 2
692 335.11 temperature 25 14400 < th dose independent rect. 18 1
714 335.23 temperature 25 14400 > th dose independent rect. 18 1
720 335.33 humidity 90 43200 < th dose independent rect. 9 2
741 335.67 temperature 30 14400 > th dose independent rect. 13 21
774 336.23 temperature 30 14400 < th dose independent sin 23 NA
802 336.45 temperature 30 14400 < th dose independent rect. 13 12
810 336.47 temperature 30 14400 < th dose independent rect. 13 17
814 336.48 temperature 30 14400 < th dose independent rect. 13 10
833 336.51 humidity 90 43200 > th dose independent rect. 18 4
841 336.57 humidity 90 43200 < th dose independent rect. 17 5
855 336.75 temperature 20 14400 > th dose dependent rect. 21 1
889 337.06 temperature 30 14400 < th dose independent rect. 5 20
895 337.07 temperature 30 14400 < th dose independent rect. 8 17
905 337.07 temperature 30 14400 < th dose independent rect. 2 23
907 337.07 temperature 30 14400 < th dose independent rect. 22 23
909 337.08 temperature 30 14400 < th dose independent no NA NA
924 337.08 temperature 30 14400 < th dose independent rect. 8 22
963 337.10 temperature 25 14400 < th dose independent rect. 23 1
991 337.24 temperature 30 14400 > th dose independent sin 23 NA
997 337.30 humidity 90 43200 < th dose independent rect. 18 1