Os06g0494000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0494000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.41 | 0.334 | 9.53 | 1.11 | 0.708 | 0.708 | 1.01 | -1.41 | 0.38 | 4.59 | 29.3 | 202 | -- | -- |
| 51.71 | 0.335 | 9.54 | 1.01 | 0.692 | 0.661 | 1.05 | -- | 0.377 | 4.43 | 29.19 | 229 | -- | -- |
| 52.96 | 0.339 | 9.53 | 1.11 | 0.708 | 0.708 | -- | -0.935 | 0.38 | 4.59 | 29.3 | 202 | -- | -- |
| 52.89 | 0.339 | 9.55 | 0.933 | 0.708 | 0.633 | -- | -- | 0.346 | 4.55 | 29.2 | 205 | -- | -- |
| 67.43 | 0.382 | 9.53 | 1.1 | -- | 1.03 | -- | -0.366 | 0.441 | -- | 28.5 | 257 | -- | -- |
| 62.88 | 0.372 | 9.55 | 0.833 | 1.02 | -- | 1.07 | -- | 0.304 | 4.48 | -- | -- | -- | -- |
| 65.98 | 0.38 | 9.56 | 0.825 | 1.02 | -- | -- | -- | 0.298 | 4.44 | -- | -- | -- | -- |
| 67.52 | 0.383 | 9.54 | 1.05 | -- | 0.975 | -- | -- | 0.436 | -- | 28.3 | 251 | -- | -- |
| 75.54 | 0.405 | 9.57 | -- | 0.785 | 0.517 | -- | -- | 0.235 | 4.28 | 29.16 | 206 | -- | -- |
| 122.16 | 0.516 | 9.56 | 0.865 | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
| 83.93 | 0.429 | 9.58 | -- | 1.04 | -- | -- | -- | 0.206 | 4.42 | -- | -- | -- | -- |
| 95.78 | 0.456 | 9.57 | -- | -- | 0.924 | -- | -- | 0.304 | -- | 28.46 | 252 | -- | -- |
| 141.91 | 0.556 | 9.58 | -- | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 3 | 51.85 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 9 | 51.97 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 23 | 52.34 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 57 | 53.18 | temperature | 25 | 90 | > th | dose independent | rect. | 18 | 13 |
| 82 | 53.53 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 86 | 53.58 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 11 |
| 96 | 53.75 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 129 | 54.08 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 2 |
| 134 | 54.11 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 21 |
| 158 | 54.26 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 14 |
| 159 | 54.27 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 18 | 5 |
| 171 | 54.36 | temperature | 25 | 90 | > th | dose independent | sin | 11 | NA |
| 173 | 54.36 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 21 |
| 183 | 54.41 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 12 |
| 185 | 54.41 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 187 | 54.42 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 17 |
| 199 | 54.47 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 223 | 54.51 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 224 | 54.52 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 8 |
| 258 | 54.66 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 302 | 54.79 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 308 | 54.82 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 15 | 8 |
| 337 | 54.92 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 355 | 54.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 18 | 13 |
| 375 | 55.05 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 389 | 55.08 | temperature | 30 | 30 | < th | dose independent | rect. | 18 | 18 |
| 409 | 55.11 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 23 |
| 429 | 55.15 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 18 | 1 |
| 433 | 55.17 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 442 | 55.18 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 16 | 5 |
| 479 | 55.26 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 482 | 55.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 6 |
| 505 | 55.31 | temperature | 30 | 10 | < th | dose independent | rect. | 18 | 20 |
| 525 | 55.34 | temperature | 30 | 270 | > th | dose independent | rect. | 16 | 22 |
| 527 | 55.34 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 532 | 55.35 | temperature | 25 | 10 | > th | dose independent | rect. | 20 | 5 |
| 616 | 55.51 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 631 | 55.53 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 664 | 55.57 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 14 |
| 697 | 55.61 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 14 |
| 705 | 55.62 | temperature | 30 | 10 | < th | dose independent | rect. | 9 | 14 |
| 753 | 55.72 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 754 | 55.72 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 10 |
| 784 | 55.75 | temperature | 25 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 785 | 55.76 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 793 | 55.77 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 8 |
| 805 | 55.79 | wind | 3 | 30 | > th | dose independent | rect. | 12 | 8 |
| 846 | 55.84 | temperature | 25 | 720 | < th | dose independent | sin | 14 | NA |
| 853 | 55.85 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 23 |
| 869 | 55.88 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 898 | 55.92 | temperature | 30 | 10 | < th | dose independent | rect. | 15 | 23 |
| 913 | 55.95 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 10 |
| 944 | 55.97 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 998 | 56.05 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 5 |