Os06g0493800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os06g0493800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.69 | 0.395 | 3.28 | -0.0574 | 0.518 | 1.06 | 1.38 | -3.85 | 0.262 | 18.8 | 30 | 266 | -- | -- |
| 71.66 | 0.394 | 3.24 | 0.254 | 0.488 | 0.66 | 1.22 | -- | 0.265 | 18.9 | 29.8 | 281 | -- | -- |
| 75.14 | 0.404 | 3.26 | -0.00793 | 0.486 | 1.05 | -- | -2.88 | 0.277 | 18.6 | 30.1 | 275 | -- | -- |
| 75.35 | 0.404 | 3.24 | 0.23 | 0.492 | 0.701 | -- | -- | 0.276 | 18.6 | 29.8 | 297 | -- | -- |
| 84.48 | 0.428 | 3.25 | -0.0626 | -- | 1.21 | -- | -2.06 | 0.216 | -- | 29.6 | 331 | -- | -- |
| 80.7 | 0.421 | 3.25 | 0.358 | 0.738 | -- | 1.6 | -- | 0.251 | 18.4 | -- | -- | -- | -- |
| 86.86 | 0.436 | 3.25 | 0.339 | 0.748 | -- | -- | -- | 0.257 | 18.1 | -- | -- | -- | -- |
| 84.26 | 0.428 | 3.24 | 0.18 | -- | 0.974 | -- | -- | 0.236 | -- | 29.53 | 335 | -- | -- |
| 76.73 | 0.408 | 3.24 | -- | 0.484 | 0.729 | -- | -- | 0.25 | 18.6 | 29.8 | 294 | -- | -- |
| 115.86 | 0.503 | 3.23 | 0.318 | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
| 89.89 | 0.444 | 3.26 | -- | 0.743 | -- | -- | -- | 0.219 | 18.1 | -- | -- | -- | -- |
| 85.1 | 0.43 | 3.24 | -- | -- | 0.994 | -- | -- | 0.217 | -- | 29.52 | 335 | -- | -- |
| 118.52 | 0.508 | 3.24 | -- | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.33 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 8 |
| 35 | 69.38 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 18 |
| 49 | 69.65 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 23 |
| 69 | 69.97 | humidity | 80 | 90 | < th | dose dependent | rect. | 12 | 22 |
| 84 | 70.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 91 | 70.18 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 23 |
| 97 | 70.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 112 | 70.29 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 14 |
| 113 | 70.30 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 8 |
| 117 | 70.32 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 8 |
| 119 | 70.33 | temperature | 30 | 270 | > th | dose independent | rect. | 16 | 23 |
| 122 | 70.33 | temperature | 30 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 136 | 70.46 | temperature | 30 | 270 | > th | dose independent | sin | 23 | NA |
| 178 | 70.52 | humidity | 60 | 270 | > th | dose independent | rect. | 7 | 22 |
| 216 | 70.65 | radiation | 40 | 270 | < th | dose independent | rect. | 17 | 22 |
| 223 | 70.69 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 7 |
| 225 | 70.70 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 323 | 70.75 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 340 | 70.84 | humidity | 60 | 270 | > th | dose independent | rect. | 15 | 22 |
| 345 | 70.85 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 23 |
| 349 | 70.86 | humidity | 70 | 90 | < th | dose independent | rect. | 12 | 22 |
| 350 | 70.87 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 18 |
| 371 | 70.91 | temperature | 30 | 270 | < th | dose independent | sin | 19 | NA |
| 397 | 70.96 | radiation | 40 | 270 | < th | dose independent | rect. | 8 | 15 |
| 399 | 70.96 | humidity | 60 | 270 | > th | dose independent | rect. | 7 | 20 |
| 411 | 70.98 | radiation | 40 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 435 | 71.03 | humidity | 70 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 438 | 71.05 | humidity | 60 | 270 | > th | dose independent | rect. | 8 | 14 |
| 449 | 71.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 467 | 71.12 | humidity | 70 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 473 | 71.14 | radiation | 40 | 270 | > th | dose dependent | rect. | 13 | 1 |
| 475 | 71.14 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 484 | 71.18 | humidity | 70 | 270 | < th | dose dependent | no | NA | NA |
| 485 | 71.18 | humidity | 70 | 270 | < th | dose dependent | rect. | 6 | 12 |
| 572 | 71.22 | humidity | 70 | 90 | < th | dose independent | rect. | 12 | 19 |
| 576 | 71.23 | humidity | 70 | 90 | < th | dose independent | rect. | 12 | 8 |
| 605 | 71.26 | radiation | 40 | 270 | < th | dose independent | rect. | 7 | 20 |
| 609 | 71.27 | humidity | 60 | 270 | > th | dose independent | rect. | 8 | 18 |
| 614 | 71.29 | humidity | 70 | 270 | < th | dose dependent | sin | 22 | NA |
| 623 | 71.31 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 666 | 71.38 | radiation | 40 | 270 | < th | dose independent | rect. | 8 | 18 |
| 671 | 71.39 | radiation | 40 | 270 | < th | dose independent | rect. | 7 | 7 |
| 680 | 71.40 | radiation | 40 | 270 | > th | dose dependent | sin | 13 | NA |
| 682 | 71.40 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 728 | 71.50 | radiation | 40 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 782 | 71.61 | temperature | 30 | 270 | > th | dose dependent | sin | 2 | NA |
| 802 | 71.64 | humidity | 80 | 90 | < th | dose dependent | rect. | 12 | 8 |
| 937 | 71.79 | temperature | 25 | 90 | > th | dose dependent | sin | 18 | NA |
| 974 | 71.83 | humidity | 80 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 993 | 71.86 | humidity | 80 | 10 | < th | dose dependent | rect. | 13 | 7 |