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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0493700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.98 (0.0527) R2 : 0.214
β1 : 1.09 (0.264) R2dD : 0.0731 R2D : -0.156
β2 : 0.751 (0.107) R2dC : 0.0861 R2C : 0.0122
β3 : -0.277 (0.152) R2dE : 0.00831 R2E : -0.0465
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.35 (0.585) R2dD*E : 0.158 R2D*E : -0.101
γ1 : 0.779 (0.115) R2dN8 : 0.152 R2N8 : 0.0424
σ : 0.84
deviance : 324.95
__
_____
C
peak time of C : 22.8
E
wheather : atmosphere
threshold : 1010
memory length : 23621
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
323.88 0.846 5 1.07 0.763 -0.268 0.648 -3.04 0.753 22.9 1010 22488 -- --
347.01 0.868 5.17 -0.323 0.776 -0.472 0.612 -- 0.382 23.1 1011 47520 -- --
324.95 0.84 4.98 1.09 0.751 -0.277 -- -3.35 0.779 22.8 1010 23621 -- --
348.82 0.87 5.16 -0.375 0.759 -0.496 -- -- 0.373 23 1011 47520 -- --
359.89 0.884 4.95 1.06 -- -0.344 -- -3.77 0.796 -- 1011 24439 -- --
350.38 0.878 5.12 0.114 0.768 -- 0.708 -- 0.554 23 -- -- -- --
352.51 0.879 5.12 0.0847 0.765 -- -- -- 0.552 23 -- -- -- --
384.6 0.913 5.14 -0.395 -- -0.535 -- -- 0.365 -- 1011 47520 -- --
350.29 0.872 5.13 -- 0.76 -0.253 -- -- 0.477 23 1011 47520 -- --
388.91 0.921 5.1 0.102 -- -- -- -- 0.557 -- -- -- -- --
352.7 0.879 5.12 -- 0.765 -- -- -- 0.542 23 -- -- -- --
386.23 0.915 5.12 -- -- -0.28 -- -- 0.474 -- 1011 47520 -- --
389.19 0.921 5.1 -- -- -- -- -- 0.546 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 320.27 wind 1 14400 < th dose independent rect. 1 2
2 322.44 humidity 60 14400 < th dose independent rect. 18 17
3 322.65 humidity 50 14400 < th dose independent rect. 14 3
19 322.66 humidity 60 14400 > th dose independent rect. 18 16
20 322.76 wind 1 14400 > th dose independent rect. 1 2
22 322.80 humidity 50 14400 < th dose independent sin 15 NA
23 322.82 humidity 50 14400 < th dose independent rect. 14 22
24 322.87 humidity 60 14400 < th dose dependent rect. 17 19
51 323.44 humidity 50 14400 < th dose dependent rect. 14 20
52 323.45 humidity 50 14400 > th dose independent rect. 14 22
53 323.50 humidity 50 14400 < th dose dependent rect. 14 4
71 323.58 humidity 50 14400 > th dose independent sin 15 NA
79 323.85 humidity 50 14400 > th dose independent rect. 13 8
83 323.87 humidity 50 14400 > th dose independent rect. 13 5
85 323.88 humidity 50 14400 > th dose independent rect. 13 18
88 323.89 humidity 50 14400 > th dose independent rect. 13 14
103 324.06 humidity 50 14400 > th dose independent rect. 14 3
110 324.20 humidity 60 14400 < th dose dependent sin 10 NA
113 324.28 humidity 60 14400 < th dose independent rect. 8 3
129 324.31 humidity 60 14400 > th dose independent rect. 8 3
139 324.35 humidity 60 14400 > th dose independent rect. 5 6
144 324.36 humidity 60 14400 > th dose independent rect. 2 9
165 324.46 humidity 50 14400 < th dose dependent sin 12 NA
167 324.47 humidity 70 14400 < th dose dependent rect. 19 15
186 324.57 humidity 60 14400 < th dose dependent rect. 11 1
200 324.73 humidity 60 14400 < th dose dependent rect. 7 5
229 324.82 humidity 50 14400 < th dose independent rect. 9 9
254 324.87 humidity 50 14400 > th dose independent rect. 9 9
255 324.87 humidity 50 14400 > th dose independent rect. 9 12
260 324.88 humidity 50 14400 < th dose independent no NA NA
341 324.88 humidity 50 14400 > th dose independent rect. 9 22
371 324.89 humidity 50 14400 > th dose independent rect. 9 18
389 324.92 humidity 50 14400 > th dose independent rect. 6 12
392 324.92 humidity 50 14400 > th dose independent rect. 6 15
393 324.92 humidity 50 14400 > th dose independent rect. 2 16
412 324.93 humidity 50 14400 > th dose independent rect. 2 19
422 324.93 humidity 50 14400 > th dose independent rect. 20 22
449 324.94 humidity 50 14400 > th dose independent rect. 6 21
506 324.95 humidity 50 14400 > th dose independent rect. 22 23
507 324.96 humidity 50 14400 > th dose independent no NA NA
553 325.01 wind 1 14400 < th dose dependent rect. 1 2
557 325.03 humidity 70 14400 < th dose independent rect. 7 1
563 325.11 humidity 70 14400 < th dose independent rect. 21 11
576 325.17 atmosphere 1010 14400 > th dose dependent rect. 2 1
577 325.17 atmosphere 1010 14400 > th dose dependent rect. 23 4
617 325.27 wind 1 14400 > th dose independent rect. 8 2
641 325.36 humidity 60 14400 < th dose independent sin 10 NA
725 325.56 atmosphere 1010 14400 < th dose independent rect. 9 1
732 325.58 atmosphere 1010 14400 > th dose dependent sin 8 NA
736 325.59 atmosphere 1010 14400 > th dose dependent rect. 6 1
854 325.84 humidity 50 14400 > th dose independent sin 10 NA
873 325.88 atmosphere 1010 14400 > th dose dependent rect. 9 1
931 326.04 atmosphere 1010 14400 > th dose independent rect. 9 1