Os06g0490700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0490700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.27 | 0.397 | 7.72 | -0.827 | 1.29 | -2.38 | -0.497 | -2.43 | -0.0391 | 21 | 15.89 | 6213 | -- | -- |
| 75.27 | 0.404 | 7.65 | -0.267 | 1.21 | -2.17 | -0.28 | -- | -0.002 | 21.2 | 17.74 | 5556 | -- | -- |
| 72.04 | 0.395 | 7.71 | -0.798 | 1.3 | -2.38 | -- | -2.37 | -0.0173 | 21 | 16.3 | 6287 | -- | -- |
| 74.89 | 0.403 | 7.68 | -0.605 | 1.24 | -1.84 | -- | -- | -0.17 | 21.3 | 21.42 | 5513 | -- | -- |
| 160.98 | 0.591 | 7.66 | -0.734 | -- | -2.27 | -- | -2.08 | 0.0487 | -- | 16.6 | 7243 | -- | -- |
| 185.72 | 0.639 | 7.75 | -1.42 | 1.22 | -- | -0.633 | -- | -0.451 | 20.9 | -- | -- | -- | -- |
| 187.09 | 0.641 | 7.75 | -1.4 | 1.22 | -- | -- | -- | -0.451 | 20.9 | -- | -- | -- | -- |
| 161.19 | 0.591 | 7.61 | -0.472 | -- | -1.92 | -- | -- | 0.0293 | -- | 20.76 | 5831 | -- | -- |
| 76.22 | 0.407 | 7.61 | -- | 1.31 | -2.13 | -- | -- | 0.194 | 21 | 19.18 | 6251 | -- | -- |
| 272.6 | 0.771 | 7.72 | -1.4 | -- | -- | -- | -- | -0.459 | -- | -- | -- | -- | -- |
| 238.66 | 0.723 | 7.71 | -- | 1.23 | -- | -- | -- | -0.295 | 20.8 | -- | -- | -- | -- |
| 164.24 | 0.597 | 7.55 | -- | -- | -2.17 | -- | -- | 0.261 | -- | 17.88 | 7247 | -- | -- |
| 324.17 | 0.84 | 7.68 | -- | -- | -- | -- | -- | -0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.54 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 66.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 13 | 66.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 16 | 66.88 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 19 | 66.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 23 | 67.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 24 | 67.43 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 25 | 67.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 26 | 67.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 33 | 67.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 38 | 67.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 11 |
| 41 | 67.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 54 | 67.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 87 | 67.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 148 | 68.05 | radiation | 1 | 43200 | < th | dose dependent | sin | 19 | NA |
| 153 | 68.06 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 162 | 68.10 | radiation | 1 | 14400 | < th | dose dependent | sin | 15 | NA |
| 182 | 68.15 | temperature | 20 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 193 | 68.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 285 | 68.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 16 |
| 296 | 68.41 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 20 |
| 324 | 68.47 | temperature | 20 | 43200 | < th | dose dependent | sin | 9 | NA |
| 391 | 68.60 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 397 | 68.60 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 412 | 68.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 457 | 68.72 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 579 | 69.02 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 17 |
| 592 | 69.05 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 599 | 69.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 615 | 69.12 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 696 | 69.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 737 | 69.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 757 | 69.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 20 |
| 786 | 69.32 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 798 | 69.34 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 821 | 69.40 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 832 | 69.41 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 14 |
| 842 | 69.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 857 | 69.47 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 864 | 69.48 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 896 | 69.56 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 14 |
| 905 | 69.57 | temperature | 20 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 920 | 69.61 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 923 | 69.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 926 | 69.62 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 964 | 69.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 973 | 69.72 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 975 | 69.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 13 |