Os06g0487300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0487300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.06 | 0.55 | 8.07 | -0.856 | 1.96 | -2.04 | -0.517 | 8.91 | -0.154 | 23.6 | 25.15 | 4478 | -- | -- |
| 153.69 | 0.577 | 8.16 | -1.49 | 1.97 | -1.96 | -0.443 | -- | 0.178 | 23.7 | 12.49 | 33178 | -- | -- |
| 138.1 | 0.547 | 8.06 | -0.698 | 1.94 | -2.15 | -- | 9.8 | -0.171 | 23.6 | 25.67 | 4502 | -- | -- |
| 154.05 | 0.578 | 8.18 | -1.41 | 1.95 | -2.03 | -- | -- | 0.149 | 23.7 | 11.62 | 38869 | -- | -- |
| 313.19 | 0.829 | 8.2 | -2.32 | -- | -2.65 | -- | 7.28 | -0.376 | -- | 25.67 | 4502 | -- | -- |
| 203.03 | 0.668 | 8.35 | -3.4 | 1.91 | -- | -0.595 | -- | -0.671 | 23.6 | -- | -- | -- | -- |
| 204.55 | 0.67 | 8.35 | -3.37 | 1.91 | -- | -- | -- | -0.668 | 23.6 | -- | -- | -- | -- |
| 277.7 | 0.78 | 8.21 | -2.73 | -- | -3.09 | -- | -- | -0.208 | -- | 15.8 | 5956 | -- | -- |
| 169.08 | 0.606 | 8.07 | -- | 2.01 | -2.91 | -- | -- | 0.567 | 23.6 | 10.61 | 39776 | -- | -- |
| 434.08 | 0.974 | 8.31 | -3.32 | -- | -- | -- | -- | -0.646 | -- | -- | -- | -- | -- |
| 504.63 | 1.05 | 8.27 | -- | 1.87 | -- | -- | -- | -0.292 | 23.5 | -- | -- | -- | -- |
| 415.13 | 0.949 | 8.03 | -- | -- | -2.83 | -- | -- | 0.57 | -- | 7.042 | 47520 | -- | -- |
| 725 | 1.26 | 8.23 | -- | -- | -- | -- | -- | -0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 2 | 128.76 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 8 | 129.50 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 29 | 131.06 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 41 | 131.58 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 46 | 131.74 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 52 | 132.05 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 64 | 132.12 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 93 | 132.72 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 108 | 132.91 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 116 | 132.99 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
| 125 | 133.08 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 142 | 133.22 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 146 | 133.33 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 173 | 133.54 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 205 | 133.85 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 228 | 133.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 239 | 134.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 249 | 134.19 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 260 | 134.25 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 261 | 134.25 | radiation | 20 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 263 | 134.26 | radiation | 20 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 284 | 134.33 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 289 | 134.36 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 296 | 134.40 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 297 | 134.40 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 320 | 134.50 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 361 | 134.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 373 | 134.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 385 | 134.76 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 16 |
| 395 | 134.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 400 | 134.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 401 | 134.84 | wind | 5 | 43200 | > th | dose dependent | sin | 20 | NA |
| 402 | 134.85 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 438 | 134.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 450 | 135.02 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 453 | 135.03 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 464 | 135.10 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 465 | 135.12 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 479 | 135.19 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 499 | 135.25 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 14 |
| 506 | 135.27 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 513 | 135.29 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 521 | 135.32 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 553 | 135.40 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 558 | 135.41 | temperature | 15 | 43200 | > th | dose independent | sin | 6 | NA |
| 596 | 135.47 | temperature | 15 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 607 | 135.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 614 | 135.51 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 619 | 135.51 | radiation | 1 | 43200 | < th | dose dependent | sin | 11 | NA |
| 667 | 135.58 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 679 | 135.60 | temperature | 15 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 690 | 135.62 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 710 | 135.63 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 724 | 135.64 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 746 | 135.67 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 747 | 135.67 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 802 | 135.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 820 | 135.75 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 891 | 135.83 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 901 | 135.84 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 915 | 135.86 | temperature | 15 | 43200 | < th | dose independent | sin | 7 | NA |
| 962 | 135.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 6 |